Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1018 ATGGGTGGGCCAGAGTCCCACGATGAACATCAAATTGAGGATTTGAATCAACGGTTGGAACAGATGATGGAGGAGAAACCCAAGGCCCACAATGACATGCCTTCTGTACAAGATCCTGCTGCTGCTGCTGCAGCTGCCGCACAGGCAAGCAGGGAGGAGGTAGATTCTCGATCAGTGTTTGTTGGTAATGTGGATTATTCTTGTACCCCTGAAGAAGTGCAGCAGCATTTCCAGGCATGCGGGACAGTGAATAGAGTCACTATCCGATCCAACAAGTATGGCCAGCCAAAAGGTTATGCTTATGTTGAATTTCTTGAAACAGAGGCTGTTCAAGAGGCACTCCTCCTGAATGAATCTGAGCTACACGGCCGCCAGTTGAAGGTATCAGCAAAGCGAACCAACGTCCCTGGGTTGAAGCAGTTTCGTCCACGACGAGTAGGCTTCCGCTCAAGGAGCACACATATGCCTCCTTATCTCTGCCCCTATGGATACGGGAAGGTTCCCAGGTTCAGGATGCCCATGCGGTACAACCCGTACTACTGA 543 50.64 MGGPESHDEHQIEDLNQRLEQMMEEKPKAHNDMPSVQDPAAAAAAAAQASREEVDSRSVFVGNVDYSCTPEEVQQHFQACGTVNRVTIRSNKYGQPKGYAYVEFLETEAVQEALLLNESELHGRQLKVSAKRTNVPGLKQFRPRRVGFRSRSTHMPPYLCPYGYGKVPRFRMPMRYNPYY* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16968651 16983804 - Vvi3g1018 Vvi3g1018 784693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1018 180 Gene3D - 4 130 IPR012677 -
Vvi3g1018 180 SMART rrm1_1 58 129 IPR000504 GO:0003723
Vvi3g1018 180 Coils Coil 5 32 - -
Vvi3g1018 180 MobiDBLite consensus disorder prediction 1 32 - -
Vvi3g1018 180 CDD RRM_II_PABPs 58 129 - -
Vvi3g1018 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 133 IPR000504 GO:0003723
Vvi3g1018 180 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 10 177 - -
Vvi3g1018 180 MobiDBLite consensus disorder prediction 1 54 - -
Vvi3g1018 180 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 10 177 - -
Vvi3g1018 180 SUPERFAMILY RNA-binding domain, RBD 40 151 IPR035979 GO:0003676
Vvi3g1018 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 127 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1018 K14396 PABPN1, PABP2; polyadenylate-binding protein 2 - vvi:100258174 365.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1018 . . . . . . . Bma12g00369 . . . . . . . . . . . . . . . . Cla10g00890 Cam10g0915 . Cco10g0911 Clacu10g0942 Cmu10g1729 Cre10g1101 . . . . . . . . . . . . . . . . . . Cmo16g00250 . . . . Cpe14g00191 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000374 6 8 4 4 4 3 7 3 3 4 3 3 6 4 4 6 3 6 5 3 4 3 4 3 4 2 4 8 5 1 127