Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g102 ATGATACAGTTCCTTAGCATTGGAGAGCAAATTAGGATGGTAGAGTCTGTAGTTTTCTTTGCAGCTGAAAGGTTGGGTGACTTCATCATTCAAAATGCTGTTTCCTTCGAAGGAGTGCACCAACAAGTTGTACGTTTGAGGGCTGAGCTAATGCGGATGCAGTGTATCCTAAATGATGCAGATACAAGGCAAGAAGATAATGCTGGAGTGCACAAATGTGTTTATGAAATTCAAAATGCTGCTTCTGATGCTGAAGATACCGTAGACCTGAGAGTCCGAACCACAATCCAAATTAAAACAAAAGACATCTCAAGAAGTAGAGAAGCGTATGGGATGAATAATATTGGAGTAGGAACTAATGCAACTGAGAGGCTGTGGAAACTAAGAAAATCTAATCCTCCTGTAGAAAAACAGGGTATTATGGGAATGGCTGGCATAGGCCAAACTACTCTTGCCGAACAAATGCTGATGAAGCTCAGGCAATCATCTCCTCGAATAGAGGATCAGGGTATCGTCGGCCTCCAGAATGATACAATTCAGCTAGTGGAGCGGCTGCTGAGAAAGGACCAAAGGCGAACTGTGGTTTCAATTGTGGGAATGGGAGGGATAGGCAAAACTACTCTTGCCAAGAAAGTCTATAACGATAGAAGAGTGGTGAATCATTTTCAGTATTGTCGAGCTTGGGTATATGTGTCTCTAGACTGTAAACCCAGAGACATTTTTCAGAGAATTATAAACCAAATTTCTTTGTCAAGTGAATATTGGAAATATGTTCCAAATGCGTTTCCTAGGGAGAGAAATGGCAGCAGGTTACTTCTCACAACTCGAAATAAGGATGTTGCTCTGCATGCTGATCCCCTAAGTGTTCAGCATACAATTCAACTTCTTTCTGCAAACGAGAGCTGGAGGCTGTTTTGTAGGACTGCATTCCCAGGAGATGACCCTGAGAGTTGTCCTCCAGATATCAAATCTATTTTCATGGCCGAGTCTGCAGTTTCCTTCGCTGTCGAAAGGATTGGTGACGCACTCCTTCAAAAAGCAATTTTCTTGAAAGGGGTGCATGAGCAAGTCGATCGGATGCAGAGAGAGCTGAAGCGGATGCAATGCTTCTTGAAAGATGCGGATGCAAAGCAGCAAGAAGATGAGAGGGTGCGCCACTGGGTTTCTGAGATCCAGGATGTTGCTTATGATGCTGAGGACGCTATAGATGCCTTTATCTTCAATGTAGAGTCTGGAAGGACAAAGTTCTTCCCCTGCCGCATGTTCAAAAAGCTGGTGAGTTCTTGTAAGGTTGGCAAGGAAATTGAAGCCATCCAAATTAAGATCCAGGACATCTCGAAGAGTCGGGAAACGTACGGAATCAATAGCATTGGAGAAGCAACTAGTCAAGCAGGTCAGAGGCTACAAAAGCTAAGATATATCTCTCCTCTTGTAAAAGAAGAGATTATTGTGGGCCTCAAGGAAGACACTGATAAGCTCGTGGAGCAGCTTGTGAAAGGGGATGAAAGACGCCTCATGGGTTATTTTCGGTTTTGTCGTGCCTGGGCTTATGTATCCCAAGATTGTAGACCCAGAGACGTTTTCCAGAATATTCTAAACCAAATTCCCTATAAACCAAATGAAGATGAAGCAAAGAAGATAGAGAAAATGCAAGAGCACGAGTTCGGGGATTTCCTTCACGAGCGTCTGAAGGAGAAAAGATTTTTGGTAGTTTTGGATGACATATGGGAAAGTGACGATTGGAAATGCCTTGCAAAGGCGTTCCCAGAGGAGAACAATGGCAGCAGATTACTTCTTACAACTAGAAACAAGAATGTTGCTTTGCAAGCAGATGCTCAAAGTGTTCCCTACGAAGTGAAACTTCTCTCCGAAGAAGAGAGTTGGAAGTTGTTTTGTAGAAGTGCAATCCCTGGCAATGTTACCGAGAGTTGTCCTCCAGAGTTAAAGGAACTTGGGGAAAAGATGGTGAAGAAATGCGCTGGTTTACCATTGGCTATTGTTGTATTGGGAGGCTTGCTATCATCCAGAACGCAGTTACTGACTGTGTGGGAAGAAGTGTTCAACAAACTCCGGGCGCACTTCGCAGTAAGCAATGGAGTAGATGCAATATTGAGCTTAAGCTACATCGATCTGCCCCACAACTTGAAATCCTGCTTTCTTTATCTAGGCCTCTTTCCAGAAGATAAGGTTATCTCCAAGAGACGTTTACTCCTTCTATGGATTGCGGAGGGTTTTATTACACAACAAGATGAACAGAGACTGGAGGACACCGCTGAGGATTATTTGAATCAGTTAATCAACAGAAACTTGGTTCAAGTGGTGTCAGTGAGTGTTAATGAGAGAGTCACACGATGTCGGATTCATGATCTAGTACGGGATTTATGCATAAAAAAGGCGAAGGAGCAAAACTTTTTTGAGATTAAAAATGACATAGTTTCTCCTTCCTCAACTAGTTCATCTCTCCCTTCAACCAAATCCCTAGGTATCATAAGCCAACCAAATTCACTTGGGAAACTAGTTCATTTAAGATACTTGACATTAAAGAGGGTTGAAAATTTCAATGACCCATACCTTTTGAGCTTCTTAGGTAAGTTAAAAGGTTTACAAACTCTGGGTGTAGAATTTTCCACAGAAGTACCAATTCTGATACAAAAAATGGAAAATCTACGATACCTTTTCCTCTCCCTTCGAAAATTGAAAATAGAAGTGGATGATGTGACAGTGGCTGAGTTTTCAAACTCCATTGCTAAGCTTGCGAATCTTCGCTCCTTGTATCTTGAGGCAGTATCACCTAACTTTATTCCATGCTTTGTCATGAATTCTTGGCTTCATCTATCTAAGTTGCTGTTGAAAGGATCAATACCGATGTTACCTAAAGCAGATGAGTTCCCGCCAAGTTTAACACAATTGACGTTGGAAAATATTAGGCTAGGCCATGGCCATATGATGATTTTAGAGAAGTTGCCAAAATTGTTGATTTTCAGATTAAGAAGAATGTCCAAATACCTTGAAGAGGAAATGCAAGTATCTGCAGATGGCTTTCCTCAACTCAAAATCCTTCAACTTTCTGGCTTACGAACATCACCAAGGTTGTTGATTATAAATAAGGGTGGCATGCCAAAACTTACTCACTTGCAGATTTTTGAATGTTACTTCAACATCGATGGACTTGGTGAGCTCTTACATCTAAGGAAGGTAGATGTCAATGTTGCATATCATCGTTGGATTTCTTCCTTGCCATATCCTTCTGAATGGCATAAAATTAGAAGGTAA 3273 41.74 MIQFLSIGEQIRMVESVVFFAAERLGDFIIQNAVSFEGVHQQVVRLRAELMRMQCILNDADTRQEDNAGVHKCVYEIQNAASDAEDTVDLRVRTTIQIKTKDISRSREAYGMNNIGVGTNATERLWKLRKSNPPVEKQGIMGMAGIGQTTLAEQMLMKLRQSSPRIEDQGIVGLQNDTIQLVERLLRKDQRRTVVSIVGMGGIGKTTLAKKVYNDRRVVNHFQYCRAWVYVSLDCKPRDIFQRIINQISLSSEYWKYVPNAFPRERNGSRLLLTTRNKDVALHADPLSVQHTIQLLSANESWRLFCRTAFPGDDPESCPPDIKSIFMAESAVSFAVERIGDALLQKAIFLKGVHEQVDRMQRELKRMQCFLKDADAKQQEDERVRHWVSEIQDVAYDAEDAIDAFIFNVESGRTKFFPCRMFKKLVSSCKVGKEIEAIQIKIQDISKSRETYGINSIGEATSQAGQRLQKLRYISPLVKEEIIVGLKEDTDKLVEQLVKGDERRLMGYFRFCRAWAYVSQDCRPRDVFQNILNQIPYKPNEDEAKKIEKMQEHEFGDFLHERLKEKRFLVVLDDIWESDDWKCLAKAFPEENNGSRLLLTTRNKNVALQADAQSVPYEVKLLSEEESWKLFCRSAIPGNVTESCPPELKELGEKMVKKCAGLPLAIVVLGGLLSSRTQLLTVWEEVFNKLRAHFAVSNGVDAILSLSYIDLPHNLKSCFLYLGLFPEDKVISKRRLLLLWIAEGFITQQDEQRLEDTAEDYLNQLINRNLVQVVSVSVNERVTRCRIHDLVRDLCIKKAKEQNFFEIKNDIVSPSSTSSSLPSTKSLGIISQPNSLGKLVHLRYLTLKRVENFNDPYLLSFLGKLKGLQTLGVEFSTEVPILIQKMENLRYLFLSLRKLKIEVDDVTVAEFSNSIAKLANLRSLYLEAVSPNFIPCFVMNSWLHLSKLLLKGSIPMLPKADEFPPSLTQLTLENIRLGHGHMMILEKLPKLLIFRLRRMSKYLEEEMQVSADGFPQLKILQLSGLRTSPRLLIINKGGMPKLTHLQIFECYFNIDGLGELLHLRKVDVNVAYHRWISSLPYPSEWHKIRR* 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1066257 1081084 - Vvi3g102 Vvi3g102 783777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g102 1090 Gene3D - 492 615 IPR027417 -
Vvi3g102 1090 SUPERFAMILY L domain-like 787 1065 - -
Vvi3g102 1090 Gene3D - 17 113 - -
Vvi3g102 1090 Gene3D - 330 439 - -
Vvi3g102 1090 Gene3D - 707 799 IPR036388 -
Vvi3g102 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 722 IPR027417 -
Vvi3g102 1090 Gene3D - 621 706 IPR042197 -
Vvi3g102 1090 CDD RX-CC_like 328 447 IPR038005 -
Vvi3g102 1090 Gene3D Ribonuclease Inhibitor 810 1080 IPR032675 -
Vvi3g102 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 328 IPR027417 -
Vvi3g102 1090 PRINTS Disease resistance protein signature 194 209 - -
Vvi3g102 1090 PRINTS Disease resistance protein signature 659 673 - -
Vvi3g102 1090 PRINTS Disease resistance protein signature 1012 1028 - -
Vvi3g102 1090 Coils Coil 357 377 - -
Vvi3g102 1090 Pfam Rx N-terminal domain 331 413 IPR041118 -
Vvi3g102 1090 Pfam Rx N-terminal domain 17 90 IPR041118 -
Vvi3g102 1090 PANTHER - 69 314 - -
Vvi3g102 1090 PANTHER - 365 1068 - -
Vvi3g102 1090 CDD RX-CC_like 15 89 IPR038005 -
Vvi3g102 1090 Gene3D - 157 260 IPR027417 -
Vvi3g102 1090 Pfam NB-ARC domain 180 257 IPR002182 GO:0043531
Vvi3g102 1090 Pfam NB-ARC domain 505 707 IPR002182 GO:0043531
Vvi3g102 1090 PANTHER DISEASE RESISTANCE PROTEIN RP 69 314 IPR044974 GO:0006952
Vvi3g102 1090 PANTHER DISEASE RESISTANCE PROTEIN RP 365 1068 IPR044974 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g102 - - - vri:117910913 939.488
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 13 16