Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1021 ATGGCGGCTTCTGCCTTGCAATCTAGCCCTAGTCATTTTGAAATCGAGTGTGATTCAGCGTCTATGCAAAGCCATAACCCCAAAACCAGGAAGCCTAGAGAAGTTGTAGGTAGTGATGGTGAGGACGGAGGTGTTTTCTTGACATGGGAGGATCTGTGGGTGACAGTTTCCAATGGAAAAAGTGGCTGCAGATCGATCCTTCAGGGCCTTACCGGCTATGCCAGGCCTGGCGAAGTTCTGGCTATAATGGGTCCTTCTGGCTGTGGCAAGTCCACTCTTCTTGATGCATTGGCAGGAAGATTAGGGTCCAACACAAGCCAGAGTGGGATCATACTAGTTAATGGTCATAAACAAGCGCTGTCTTATGGCACATCGGCATATGTGACTCAAGATGACACCTTGATCACCACTTTAACTGTTGGAGAAGCCGTGTACTACTCAGCTCTGCTCCAATTGCCAGACTCCATGTCAAAATCAGAGAAGAAGGAGAGGGCAGACATGACCATAAGAGAAATGGGCCTGCAAGATTCCATAAACACAAGAATAGGAGGGTGGGGTGTTAAAGGCATTAGTGGTGGGCAAAAGAGGAGAGTCAGCATTTGCATAGAGATCCTCACACACCCCAAGCTTCTCTTCCTTGATGAGCCAACAAGTGGGCTTGATAGTGCTGCTTCATACTATGTCATGAGCAGAATTGCAGGCCTTGATCGACAACATGGAAGGACCATCATAACATCTATTCACCAGCCCAGCAGTGAAGTCTTTGCACTCTTCAACAATCTTTGCCTTCTGTCTTCAGGTAGAACAGTTTACTTTGGTCCAGCTCATGGTGCAGATGAGTTTTTCTCTTCAAATGGTTTCCCTTGCCCTACTCATCAAAACCCATCAGATCACTTCCTCAAAACAATAAACAAAGATTTTGAAGAGGACATTGAGCAAGGTTTCGGGGGTAAGAAATCGAAAGAGGAAGCAATTGACATTCTTACGAAAGCATATAAATCATCTGATAATTTCCAGCAAGTTCAAACACAGGTTTCTGAAATATATAAACAGGATGGTGGAGCCTTGAAGAAGAGAAGCCATGCTAGCTTCCTTAACCAGTGTCTTGTTCTTACAAGAAGATCCTTCGTGAACATGTATCGGGATTTAGGCTACTACTGGTTGCGCCTAGCAATCTATGTCGCATTGACTGTAGCCCTGGGCACCATTTTTCACAACGTTGGCTATAGTAACAGTTCCATAAAGGATCGAGGTTCAATGCTCATGTATGTAGCTTCATTCTTGACTTTCATGAGTATTGGTGGATTCCCTTCTTTTGTGGAGGACATGAAGGTTTTTGGACGTGAGAGATTAAATGGGCATTATGGGTCGAGCTCATTTCTCGTTGGAAACACACTTTCTTCAGTACCATACTTGCTAGTGATTTCTCTTATTCCGGGTGCAATTGCTTATTTCCTTACTGGGCTTCAGAAAGAATATGCACACTTCATTTACTATGCTTTGGTTCTTTTCACTTGTATGATGTTGGTTGAAAGCCTTATGATGATTGTCGCAAGTGTAGTCCCCAATTTCCTCATGGGCATAATAACTGGTGCCGGCATTCAAGGGCTACTGATACTGGGTGGTGGGTTTTTCCGATTGCCCAATGATCTTCCTAATGTGTTCTGGAGATACCCGTTATACTACATCTCTTTCAATAGGTATGCGTACCAAGGATTGTACAAGAATGAGTTCCTAGGACTTACATTTCCTAGCAATATAGCTGGAGGACCACGCTCTCATGAGACTAAGCCCATTATTTATAGGCTTCATGGGCATGTGATGTGA 1827 44.17 MAASALQSSPSHFEIECDSASMQSHNPKTRKPREVVGSDGEDGGVFLTWEDLWVTVSNGKSGCRSILQGLTGYARPGEVLAIMGPSGCGKSTLLDALAGRLGSNTSQSGIILVNGHKQALSYGTSAYVTQDDTLITTLTVGEAVYYSALLQLPDSMSKSEKKERADMTIREMGLQDSINTRIGGWGVKGISGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIAGLDRQHGRTIITSIHQPSSEVFALFNNLCLLSSGRTVYFGPAHGADEFFSSNGFPCPTHQNPSDHFLKTINKDFEEDIEQGFGGKKSKEEAIDILTKAYKSSDNFQQVQTQVSEIYKQDGGALKKRSHASFLNQCLVLTRRSFVNMYRDLGYYWLRLAIYVALTVALGTIFHNVGYSNSSIKDRGSMLMYVASFLTFMSIGGFPSFVEDMKVFGRERLNGHYGSSSFLVGNTLSSVPYLLVISLIPGAIAYFLTGLQKEYAHFIYYALVLFTCMMLVESLMMIVASVVPNFLMGIITGAGIQGLLILGGGFFRLPNDLPNVFWRYPLYYISFNRYAYQGLYKNEFLGLTFPSNIAGGPRSHETKPIIYRLHGHVM* 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17161780 17168980 + Vvi3g1021 Vvi3g1021 784696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1021 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 280 IPR027417 -
Vvi3g1021 608 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 291 IPR003439 GO:0005524
Vvi3g1021 608 Pfam ABC transporter 68 218 IPR003439 GO:0005524
Vvi3g1021 608 Pfam ABC-2 type transporter 367 578 IPR013525 GO:0016020|GO:0140359
Vvi3g1021 608 Gene3D - 45 353 IPR027417 -
Vvi3g1021 608 MobiDBLite consensus disorder prediction 18 37 - -
Vvi3g1021 608 Pfam ABC-2 type transporter 248 347 IPR043926 GO:0140359
Vvi3g1021 608 SMART AAA_5 76 267 IPR003593 -
Vvi3g1021 608 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524
Vvi3g1021 608 PANTHER - 35 585 - -
Vvi3g1021 608 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 35 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1021 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100244406 1152.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00480 . . . . Cpe14g00374 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000446 4 4 7 6 7 3 4 3 3 3 2 3 3 3 3 4 3 4 3 3 3 3 3 3 3 2 2 8 4 8 114