Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1022 ATGGCTTCCTCTTCGTTCCGACCTAGTGTAAGTGATTCTGAAATTGTCTATGGCTCAGCTTCTTTGCAGAGTCATAGGCGAGAAACCAGGAAGCCCCTGGAGGTAGAAAGTGTTCCAAGCCCAAATAGTAGGGAAGTAGGAGGAGGAGTTAGTGAGGAGGGTGGTGTTTACTTGACATGGGAGAACCTGTGGGTGACGGTTTCCAATGGAAAAGGCGGCAGCAGATCGATCCTTCAAGATCTTACGGGCTATGCCAGGCCCGGCGAGGTCTTGGCCATCATGGGTCCTTCTGGTTGTGGCAAGTCCACTCTTCTTGATGCATTAGCAGGAAGATTAGAAGCAAACCAAAGTGGGAGCATACTTGTCAATGGTCGTAAACAGACACTAGCTTACGGAACATCGGCTTATGTGACTCAAGATGACACCTTGCTTACCACTTTAACTGTTGGAGAAGCCGTATACTACTCTGCTCAGCTCCAATTGCCAGACTCCATGTCAAAGCAGGAGAAGAAGGAGAGAGCAGACATGACTATAAAAGAAATGGGCTTACAAGATTCCATAAACACAAGGATAGGAGGGTGGGGTGCTAAGGGAATTAGTGGTGGGCAAAAGAGGAGAGTCAGCATTTGTGTAGAGATCTTAACACACCCCAACCTTCTCTTCCTTGATGAACCAACAAGCGGGCTTGACAGTGCAGCTTCATATTATGTCATGAGCAGAATTGCCGGTCCTGATTTCCGACATGGAAGGACCATCATTACATCCATTCATCAACCCAGTAGTGAAGTCTTTGCGCTCTTTGACAATCTTTGTCTTTTGTCTTCGGGTAGAACAGTATACTTTGGTCCCGCTCGTGCAGCAAATGAGCTTTTCTCTAGAAATGGTTTCCCATGCCCAACTCTCCAAAATCCATCAGATCACTTCCTCAAAACTATAAACAAGGATTTTGAAGAGGACATTGAACAAGGTCTAGGAGGAAAGAAACCCAAAGAAGAAGTAATCGATATCCTCATAAAGGCATACAAATCATCTGGGAGTTGCCAACAAGTTCAAGCACAGGTTACTGAAATCTGTAAACAGGAAGGTGATCAAGCGCTGCAGAAGTCGAGAGACCATGCCGGTTTCGTTAACCAGTGCCTTATTCTTACAAAAAGATCTTATGTGAACATGTCTCGCGACCTAGGATACTATTGGATGCGCCTAGGTGTGTACATCATGGTGTCTTTTGCTCTGGGCACCATTTTTTACGATCTCGGCTTTAGTAACAGCTCAATTCAGGATAGAGGTTCAATGCTCATGTTTGTAGCATCATTCCTGACATTCATGAGTATTGGTGGATTCCCATCTTTTGTGGAGGACATGAAGGTCTTCGGACGGGAGAGACTAAACGGCCATTATGGTACAGGCGCATTTGTTGTTGGAAACACACTTTCTTCTGTACCTTTCTTGCTATTGATTTCTCTGATTCCGGGTGCAATTGCTTATTACCTTGCTGGACTTCAGAAAGGATGTGAATACTTCATCTACTATGCTTTGGTGCTTTTTGCTTGTATGATGTTGGTCGAAAGCATTATGATGATTGTCGCGAGTCTCGTCCCCAATTTCCTCGTGGGCATAATAACAGGTGCTGGAATTCAAGGGCTGCTTATACTGTCCGGTGGTTTCTTCCGGCTGCCCGATAATCTTCCAAACATATTGTGGAGATACCCTTTATATTACGTCTCTTTCAATAGGTATGCTTACCAAGGAATGTATAAGAACGAGTTCACAGGACTAACATTTCCTGGGGATCAAAGTGGAGGGCCAGCCACCATTTCTGCTTTGTATCGGCTTCTGTTCTTGATTATCATCAAGACAACCGAAAAGTCAACTACTGCTAGTTTTGAGCCCTTTAAATTTCATTTCGCATACCTAACACCAGTTCGAACACTGTGCGAAAATCTAAGGGGTTTGCGAACCCATTTCACACACCCAACACTGTGCAAAACATCATTGCGAATTTATTTTTCCCCCATTTTGCAAGCACCCCCCCATTGCGAATCTCTCTGCCACCTTGTGGCCTCTTCACAGTGTCACCCCGTACCTCTATTCTGGTTCTGCCCTTTGCTCTTGCTGCCCATTCATAGAACCCAAAATGTAAGTGGGCCTCTCTACGACGATGATGAGTTGATAGAAGGAAAAACACGCTCTACCATTTATGTATTTTTCTCACATCTTTGGCTTGACTTGATAAAGAGCATAAAAGTCCTTTTGCTAAAACACATGGATTTGTCCGTGACTGCTTCCAATGGAAAAGGTGGCAGCAGACTGCTCCTTCAAGGGCTTACTGGTTTTGCCAGGCCGGGCGAAGTCTTGGCTATAATGGGTCCTTCTGGTTGCGGCAAGTCCACTCTTCTTGATGCATTAGCAGGAAGATTGGGATCCAACATAAGTCAGAGTGGAATGGTACTTGTTAATGGCCATCAACAGACACTAGCTTATGGAACATCGGCATATGTGACTCAAGATGACACATTGATTACCACTTTAACGGTTGGAGAAGCCGTGTGCTACTCTGCTCTGCTCCAGTTGCCAGACTCCATGTCCAAATCAGAGAAGAAGGAGAGAGCAGACATGACCATAAGAGAGATGGGCCTGCAAGATGCCGTAAACACAAGAATAGGAGGGTGGGGTGTTAAGGGCATTAGCGGTGGACAAAAGAGGAGAGTCAGCATATGCATAGAGATCCTAACACACCCCAAGCTTCTCTTCCTTGATGAACCGACAAGCGGGCTTGATAGTGCTGCTTCATACTATGTCATGAGCAGAATCACAGGCCTTGATCGACAACATGGAAGGACTATCATAACATCTATTCACCAGCCCAGCTGTGAGGTCTTTGCACTCTTCGACAATCTTTGTCTTCTGTCTTCAGGTAGAACAGTATACTTTGGTCCAGCTCATGCGGCAGATGAGTTCTTCTCTTCAAATGGTTTCCCTTGCCCAACTCATCAAAACCCATCAGATCACTTCCTCAAAACAATAAACAAAGATTTTGAACAGGACATTGAACAAGGTTTTGGGGGAAAGAAATCGAAAGAGGAAGCAATTGATATTCTTACAAAGGCGTACAAATCATCTGGTAATTTCCAGCAAGTTCAATCACAGGTTGCTAAGATACATAAAAAGGAAGGTGGAGCCTTGAAGAAGAGAAGCCATGCTAGCTTCCTTAACCAGTGTCTTGTTCTTACAAGAAGATCTTTCGTGAACATGTACCGAGATTTAGGCTACTACTGGTTGCGCCTAGCAGTCTATATCGCATTGACTATAGCCCTGGGCACCATTTTTTATAACGTTGGCCATAGTAACAGTTCCATTAAGGATCGAGGTGCAATGCTCATGTATGTAGCTTCATTCTTAACTTTCATGACTATTGGTGGATTCCCTTCTTTTGTGGAAGACATGAAGGTTTTTGGGCGCGAGAGATTAAATGGGCATTATGGGTCGAGTGCATTTGTTGTTGGAAACACACTTTCTTCAATACCATACTTGCTAGTGATTTCTCTGATCCCGGGCGCAATTGCTTATTACCTAACTGGACTTCAGAAAGGATGTGAACACTCCATTTACTATGCTTTGGTGCTTTTCACTTGTATGATATTGGTTGAAGGCCTTATGATGATTGTGGCGAGTATAGTCCCCAATTTCCTCATGGGTATAATAACAGGTGCTGGAATTCAAGGGCTACTGATGCTGAGTGGTGGGTTTTTCCGATTGCCGGATGATTTTCCAAAACCATTTTGGAGATACCCATTATACTACCTGTCGTTCAACAAGTATGCTTACCAAGGGCTGTACAAGAATGAGTTCCAAGGACTAAAATTTCCTAATGATGAAGCTGGAGGGCCACCCATCATTTCTGATATTTTCCTCCTCATTTTTCTTTGTTAA 3930 44.25 MASSSFRPSVSDSEIVYGSASLQSHRRETRKPLEVESVPSPNSREVGGGVSEEGGVYLTWENLWVTVSNGKGGSRSILQDLTGYARPGEVLAIMGPSGCGKSTLLDALAGRLEANQSGSILVNGRKQTLAYGTSAYVTQDDTLLTTLTVGEAVYYSAQLQLPDSMSKQEKKERADMTIKEMGLQDSINTRIGGWGAKGISGGQKRRVSICVEILTHPNLLFLDEPTSGLDSAASYYVMSRIAGPDFRHGRTIITSIHQPSSEVFALFDNLCLLSSGRTVYFGPARAANELFSRNGFPCPTLQNPSDHFLKTINKDFEEDIEQGLGGKKPKEEVIDILIKAYKSSGSCQQVQAQVTEICKQEGDQALQKSRDHAGFVNQCLILTKRSYVNMSRDLGYYWMRLGVYIMVSFALGTIFYDLGFSNSSIQDRGSMLMFVASFLTFMSIGGFPSFVEDMKVFGRERLNGHYGTGAFVVGNTLSSVPFLLLISLIPGAIAYYLAGLQKGCEYFIYYALVLFACMMLVESIMMIVASLVPNFLVGIITGAGIQGLLILSGGFFRLPDNLPNILWRYPLYYVSFNRYAYQGMYKNEFTGLTFPGDQSGGPATISALYRLLFLIIIKTTEKSTTASFEPFKFHFAYLTPVRTLCENLRGLRTHFTHPTLCKTSLRIYFSPILQAPPHCESLCHLVASSQCHPVPLFWFCPLLLLPIHRTQNVSGPLYDDDELIEGKTRSTIYVFFSHLWLDLIKSIKVLLLKHMDLSVTASNGKGGSRLLLQGLTGFARPGEVLAIMGPSGCGKSTLLDALAGRLGSNISQSGMVLVNGHQQTLAYGTSAYVTQDDTLITTLTVGEAVCYSALLQLPDSMSKSEKKERADMTIREMGLQDAVNTRIGGWGVKGISGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRITGLDRQHGRTIITSIHQPSCEVFALFDNLCLLSSGRTVYFGPAHAADEFFSSNGFPCPTHQNPSDHFLKTINKDFEQDIEQGFGGKKSKEEAIDILTKAYKSSGNFQQVQSQVAKIHKKEGGALKKRSHASFLNQCLVLTRRSFVNMYRDLGYYWLRLAVYIALTIALGTIFYNVGHSNSSIKDRGAMLMYVASFLTFMTIGGFPSFVEDMKVFGRERLNGHYGSSAFVVGNTLSSIPYLLVISLIPGAIAYYLTGLQKGCEHSIYYALVLFTCMILVEGLMMIVASIVPNFLMGIITGAGIQGLLMLSGGFFRLPDDFPKPFWRYPLYYLSFNKYAYQGLYKNEFQGLKFPNDEAGGPPIISDIFLLIFLC* 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17178216 17218628 - Vvi3g1022 Vvi3g1022 784697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1022 1309 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 300 IPR003439 GO:0005524
Vvi3g1022 1309 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 43 598 - -
Vvi3g1022 1309 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 747 1298 - -
Vvi3g1022 1309 Pfam ABC-2 type transporter 1072 1283 IPR013525 GO:0016020|GO:0140359
Vvi3g1022 1309 Pfam ABC-2 type transporter 378 589 IPR013525 GO:0016020|GO:0140359
Vvi3g1022 1309 ProSitePatterns ABC transporters family signature. 895 909 IPR017871 GO:0005524
Vvi3g1022 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 287 IPR027417 -
Vvi3g1022 1309 Gene3D - 51 298 IPR027417 -
Vvi3g1022 1309 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g1022 1309 Gene3D - 749 1058 IPR027417 -
Vvi3g1022 1309 CDD ABCG_EPDR 57 282 - -
Vvi3g1022 1309 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 752 996 IPR003439 GO:0005524
Vvi3g1022 1309 MobiDBLite consensus disorder prediction 1 51 - -
Vvi3g1022 1309 Pfam ABC-2 type transporter 257 356 IPR043926 GO:0140359
Vvi3g1022 1309 Pfam ABC-2 type transporter 953 1056 IPR043926 GO:0140359
Vvi3g1022 1309 Pfam ABC transporter 78 227 IPR003439 GO:0005524
Vvi3g1022 1309 Pfam ABC transporter 779 923 IPR003439 GO:0005524
Vvi3g1022 1309 ProSitePatterns ABC transporters family signature. 199 213 IPR017871 GO:0005524
Vvi3g1022 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 985 IPR027417 -
Vvi3g1022 1309 PANTHER XENOBIOTIC-TRANSPORTING ATPASE-RELATED 43 598 - -
Vvi3g1022 1309 PANTHER XENOBIOTIC-TRANSPORTING ATPASE-RELATED 747 1298 - -
Vvi3g1022 1309 SMART AAA_5 781 973 IPR003593 -
Vvi3g1022 1309 SMART AAA_5 87 277 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1022 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100252948 1192.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g1022 Vvi7g881 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1022 . . . . . . . Bma12g00358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000446 4 4 7 6 7 3 4 3 3 3 2 3 3 3 3 4 3 4 3 3 3 3 3 3 3 2 2 8 4 8 114