Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1024 ATGGCTTCTCCACCACCTATGAGAGGGCTAAAGGAAGAGAATGGTGAAAAGGCAGATGAGAAAATGGGAGTTTATGTGACATGGAAAGAGCTAAGTGTAACAGTCTCCAATGGAAGCAAATTCATTCTTCAAGGCCTCACTGGTTATGCACAACCTTCTCAGGTTTTGGCCATCATGGGTCCTTCTGGCTCTGGCAAATCTACTCTTCTTGATGCATTGGCTGGTAGGTTAGATTCAAGAACAAGGCACACAGGAGAGATTCTAATCAATGGTCGTAAACAGTGGTCAGCATATGGGACAATGGCTTATGTGACTCAGGATGATACTCTTACATGGACTCTTACTGTTAGAGAAGCTGTGTTCTACTCAGCACAGCTCCAACTCCCCAAGTCCATGTCGATATCTGAGAAAAAAGAGCGGTCAGAGACGACCATAAGGGAGATGGGGCTGCAGGACTCCATGGACACAAGAATAGGAGGGTGGGGAAGCAAAGGCCTCAGTGGTGGCCAAAAGAGGAGGGTTAGCATTTGTATCGAGATTTTAACGCGCCCAAAGCTTCTCTTCCTTGATGAACCAACGAGCGGATTAGACAGCGCTGCATCTTATTTTGTCATGAGGAGGATCGTGGACCTTGCTCAACAAAATGGAATGACAATTATCGCGTCCATTCATCAACCTAGCAGTGAAGTCTTTGAGCTTTTCCCTAATCTTTGTCTTCTTTCTTCAGGTAGAACCATATATTTTGGTCCCTCTCATTGTGCTAATGAGTTTTTTGCATTGAATGGCTTCCCATGCCCAGTTCTCCAGAATCCATCTGATCACTATCTTAGAACAATCAATACAGACTTTGATGAGGACATTGAACAAGGCATTAGTGGAAAGAAAACAACTGAGGAAGTGATTAATATGCTTGCAAAATCTTATGAATTATCAGACACCTGCAAGCAGATTAAAAGACAGGTTGCTGAGATATGTAGACAAGGTGGAGGAGAATTGGAGAAGAAGGGGAGCCAAGCTAGCTTCATTACTCAATGCCTCATTCTCACTCGAAGGTCTTTCTTGAACATGCATCGTGATCTAGGTTACTATTGGTTGCGACTTGTTATCTATGTCACGTTGGGTTTAGGGTTAGGCACCGTCTTTTATGATGTTGGCGCTGGCTATGAATCAATTCGAGCAAGAGGTTCAATGATCATGTTCGTGGTGTCCTTCTTGACAATCATGGCCATTGGAGGGTTCCCATCATTTGTGGAAGAAATGAAGGTGTTTAGACGTGAAAGATTGAATGGGCACTACGGCCCTGGTGCATTCGTCATTGGCAACACGTTTTCTTCAATGCCTTTCTTGCTCATCATCTCATTGATCCCTGGTGCAATTACTTACTACCTTGTTGGACTTCAACAAGGAGGCAAATGCTTCGTCTACTTTGTAACGGTACTTTTTACTTGTATGCTATTGGTCGAGAGCTTGATGATGATTGTTGCAAGCATCATGCCAAACTTCCTTATGGGGCTAATAACAGGTGCTGGAATCCAAGGACTGATGATACTAAGCGCCGGGTTTTTTCGATTACCAAGTGATCTTCCCAAGCTTTTATGGAGGTATCCATTGTACTACATTGCCTTCCACAAGTATGCCTATCAAGGGCTATATAAGAATGAGTTTGAAGGGCTAACATTTCCTAGTAATGAAGCATTAGGGCATCCTACTACCATCAATGGTGACAAAATTTTGAGGGATATATGGCAAGTAGAAATGGGATACTCCAAGTGGATCGATTTAGCTATCTTATTTGCAATGGTGGTAGTTTATAGACTCGTATTCTTCGTAATTATTAAGATTTTTGAAATAATTAAGATTGTGATAGAGAATGGATTCTCTAAATTGCTTATACAAAAGATTCAATGTCATATGATAAGTAAACAATTACAAAATTAA 1938 41.85 MASPPPMRGLKEENGEKADEKMGVYVTWKELSVTVSNGSKFILQGLTGYAQPSQVLAIMGPSGSGKSTLLDALAGRLDSRTRHTGEILINGRKQWSAYGTMAYVTQDDTLTWTLTVREAVFYSAQLQLPKSMSISEKKERSETTIREMGLQDSMDTRIGGWGSKGLSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYFVMRRIVDLAQQNGMTIIASIHQPSSEVFELFPNLCLLSSGRTIYFGPSHCANEFFALNGFPCPVLQNPSDHYLRTINTDFDEDIEQGISGKKTTEEVINMLAKSYELSDTCKQIKRQVAEICRQGGGELEKKGSQASFITQCLILTRRSFLNMHRDLGYYWLRLVIYVTLGLGLGTVFYDVGAGYESIRARGSMIMFVVSFLTIMAIGGFPSFVEEMKVFRRERLNGHYGPGAFVIGNTFSSMPFLLIISLIPGAITYYLVGLQQGGKCFVYFVTVLFTCMLLVESLMMIVASIMPNFLMGLITGAGIQGLMILSAGFFRLPSDLPKLLWRYPLYYIAFHKYAYQGLYKNEFEGLTFPSNEALGHPTTINGDKILRDIWQVEMGYSKWIDLAILFAMVVVYRLVFFVIIKIFEIIKIVIENGFSKLLIQKIQCHMISKQLQN* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17271806 17276119 - Vvi3g1024 Vvi3g1024 784699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1024 645 Pfam ABC-2 type transporter 224 324 IPR043926 GO:0140359
Vvi3g1024 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 252 IPR027417 -
Vvi3g1024 645 SMART AAA_5 52 252 IPR003593 -
Vvi3g1024 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11-LIKE 14 624 - -
Vvi3g1024 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 267 IPR003439 GO:0005524
Vvi3g1024 645 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524
Vvi3g1024 645 Pfam ABC-2 type transporter 343 555 IPR013525 GO:0016020|GO:0140359
Vvi3g1024 645 Gene3D - 25 350 IPR027417 -
Vvi3g1024 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 14 624 - -
Vvi3g1024 645 CDD ABCG_EPDR 23 249 - -
Vvi3g1024 645 Pfam ABC transporter 44 194 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1024 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100251372 1220.68
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000446 4 4 7 6 7 3 4 3 3 3 2 3 3 3 3 4 3 4 3 3 3 3 3 3 3 2 2 8 4 8 114