Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1025 ATGGCTTCCACCGCCTCCGCTCTCACCACCACCACCTCCTCCTCCAATGTCGCCACCCCTTTTCTGTATCTCCGCCGCACTCATATCTCCCACTTCACCTCTAATTTCAGGTCTGGTAGCAGAGTATGCTTCTCAAATAATGCGAAAATATCATCATATCCGTGCCATGATTACCGAAACCGAGTAAAATTCAAACGATTTGAATGTAGAGTAGAGGATTCTTACACTAATAATAAAGAGATATCGAAAGGAACCTTGATATGGAGAGCAATCAAATTGCCAATTTACTCTGTTGCATTGGTTCCCCTCACTGTAGGCAGTGCTGCGGCTTATTTGCAGACAGGCCTATTTTCAGCAAGGCAGTATTTTACTCTCTTGGCTTCCTCAGTTCTTATCATCGCTTGGCTCAATTTAAGCAACGATGTGTACGATTTTGACACAGGAGCAGATAAGAACAAGAAAGAATCTGTTGTAAACATGGTTGGCAGTCGTACAGGGACCCATGCTGCTGCATATGCATTGCTTGCTCTTGGGTTTGTTGGGCTTAGCTGGGCATCCATGGTGGCTGGAAATTTTCGAGCAATACTATTACTGGCTTGTGCAGTTACTTGTGGGTATATATATCAGTGTCCACCATTTCGGTTAAGTTACCAGGGTCTTGGAGAGCCTCTGTGCTTTGCGGCATTCGGTCCTTTCGCCACCACTGCCTTCTACTTGATGCAGACAGCTACAAGTGAGATGATCTCTCCTCTGGTGACTGCCACAGTTCTTTCTGCATCACTTCTTGTTGGTTTCACAACAACCCTAATCCTCTTCTGCAGTCACTTCCATCAGGTGGAAGGAGATAGAGCGGTTGGAAAAATGTCACCTCTCGTTAGGCTCGATACTGAGAAGGGCTCAAGGATTGTAAAAATGGCAATGGCGATGCTCTACTCGCTTCTATTAGCTTTTGGTCTAGCCAAAACTCTTCCCTTCACTTGCATATTCTCTTGTGCTCTAACAATACCCATGGCGAAGCTGGTTGTTAGCTATGTTGAAGACAATCACAAGGACAACTCGAAGATCTTCATGGCAAAGTATTATTGTGTGAGATTACACGCCTTATTTGGAGCTGCATTGGCCGCTGGGCTTGTGGCAGCTAGATTACTCACCAAAAGATAA 1161 45.22 MASTASALTTTTSSSNVATPFLYLRRTHISHFTSNFRSGSRVCFSNNAKISSYPCHDYRNRVKFKRFECRVEDSYTNNKEISKGTLIWRAIKLPIYSVALVPLTVGSAAAYLQTGLFSARQYFTLLASSVLIIAWLNLSNDVYDFDTGADKNKKESVVNMVGSRTGTHAAAYALLALGFVGLSWASMVAGNFRAILLLACAVTCGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLMQTATSEMISPLVTATVLSASLLVGFTTTLILFCSHFHQVEGDRAVGKMSPLVRLDTEKGSRIVKMAMAMLYSLLLAFGLAKTLPFTCIFSCALTIPMAKLVVSYVEDNHKDNSKIFMAKYYCVRLHALFGAALAAGLVAARLLTKR* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17278266 17287864 + Vvi3g1025 Vvi3g1025 784700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1025 386 PANTHER 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE 72 382 IPR026046 GO:0004659
Vvi3g1025 386 TIGRFAM menA_cyano-plnt: 1,4-dihydroxy-2-naphthoate phytyltransferase 88 378 IPR011937 GO:0004659|GO:0016021|GO:0042372
Vvi3g1025 386 CDD PT_UbiA_UBIAD1 88 359 IPR026046 GO:0004659
Vvi3g1025 386 PANTHER UBIA PRENYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1 72 382 - -
Vvi3g1025 386 Hamap 2-carboxy-1,4-naphthoquinone phytyltransferase [menA]. 72 377 IPR011937 GO:0004659|GO:0016021|GO:0042372
Vvi3g1025 386 Pfam UbiA prenyltransferase family 100 357 IPR000537 GO:0016021|GO:0016765
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1025 K23094 ABC4, menA; 2-carboxy-1,4-naphthoquinone phytyltransferase [EC:2.5.1.130] - vvi:100256517 709.909
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1025 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007491 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 4 3 1 36