Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1026 ATGGGTGACTTACCCGTCAACGTTGAAAAGTCAACAAAACTTATAGAGAAATCGCTTTCCATAATAATTGAGCGAAGTCTCTGCCGCCTCAACACCCTACCCTCCCAAAACGCTGCGTTTTGCCTCTCGACACTCTCAAAACGCTGCGCTTTGACTCTACCAGTCTCCGTAAATCGACCGCCGATGCCGCCGCGAGCCGCCGTGAGACGACCTTCGACAGCGTCTGCTCTCAAGAAGAAGCCTCCAAGAGAGGAAAAGGAGGAGAAGGAGTTTGTTGTGGGAGACATGGATAGATCAGAAAGGTTGGAGCTTGAAGATAATGACCCACAGTCTGATGCAGAAGACGATATGGGGCATTATATGGGAACAGAAGAGGAATGTCGGGAACAGAGAATTGATGGAGATGATGACCTGATGGGAGATATGATGGAAGGCGAGGATGAGGAAGAGGAGGATATGGGTGAGGATGATGTGGGAGGTGAACATGAGGAGATGATGGATGGGTATGAAGACGAGCATCATGATTTAGTTAAAGAGCGTCGAAAGCGTAAGGAGTTTGAGGTCTTTGTTGGTGGATTGGACCGAGATGTCACAGAAGATGATCTCTTTCACTTTTTCAGACAGGTGGGTGATATCACTGAAGTGAGACTTATGAAGAATGCCCTTACTCAGAAGAACAAGGGCTTTGCTTTCATACGGTTTGCAACTGTTGAGCAGGCTAGGCGTGCTGTCAATGAACTTAAGCATCCAGTGATTAATGGAAAGCAATGTGGGGTAGCTCCAAGTCAGGACAGTGACACACTCTTTGTTGGTAACATATGCAAGACATGGACAAAAGTAGCTGTGAAGGATAAGCTTGCATACTACGGTGTTGACAAGTATGAAGACTTGACATTGGTTGAAGATACCAAAAATGAGGGCATGAATCGGGGATTTGCTTTTTTGGATTTCTCTTCCAGGGCAGATGCCTTGGAAGCTTGCAAACGCTTGCAAAAGAGGGATGTTGTGTTCGGTACAGATCGAACAGCAAGAGTTGCATTTGCAGACACTTTCATAGAACCTGATGACGAAATCATGTCACAGGTCAGGACGATATTCCTTGATGGGTTGCCTGCTACTTGGGATGAGGATCGTGTCAGGGATTATCTTAAAAAGTTTGGGAGGATTGAAAAGATTGAACTTGCAAGAAATATGCCAGCTGCTAAAAGAACTGATTTTGGTTTTGTGACATTTGACACTCATGATTCTGCTGTGGCTTGTGTTGACAGTATTAATAATTCTGAGCTTGTTGATGGAGAAAGGCTGGTGAAAGTTAGAGCAAGGCTGTCTAGGCCACGCCAGAGAGGTAAGTCTGCTAAGCATGCTCGAGGTGGTTATCTAGTTGCACAGGGCAGCGGTCGAGGTTTCAAGGCTCCATGGGGATCTAGTTCATCCCGCATGGATTCTTGGAAGTTTACAGGTCGTGGAGGGAGAAGTATGCAAACGCGTGGAGCATATGATGGTGGTCTTAAGCGGCCAGTTGGTCCTAGGGATAGACACTCAATGATGGAGATGGTTCCTACTAGAGTTGGGAGCAGGAGACGATTTCCTTCCCCAGAGAGTTCCTTCGGTCGAAGGTCACCTGTTTATGAAAAGAGCAGCACGAAGAGGGAGTACATTCAACGTGATGAATCCTTTTCTAGGCCAGCTGTTTTTGCTAGAGACCCCACAGAGAGGCGTTATTATAAAGATAATTACTCTTCACGTGGATCTGAGTATTTGGACAGTCCTCCTAGAAATGTTTCTCGTGCTGCTGGTCATAGAGCTCCTCTTTATGAAGATGATGACTATGACCGATATTTGGAACGACCCACAAACTATCATGATGGTCATAGGCATGATTATGGTTCTATTTCCAGTTCAAAACGTTCCCATTCAGCAATGGAGGAAGTTCATTCTCGTTATGCTGAGCCTCCAATTAGGCACTCGAGGGCCCGTTTTGATTATGGGGGGAGCAATTCAGGATTGCCCTATGACGACCATTATGGAAGTGAATCTACAAGTGAACGCAGGATGGGCCGTGGTTCTCGTCTAGGGTATGATGGAGGTATGCGAAGTTCTTCAGGGCATTCTCGAGGAATGTATGAGACAAGAACATCAACTACTGGGTACAGAAGAGTCCTTGCAGATGATATTAGCCGGGGGAATGAAGAAGGGATGTATTCCAGCTATGACCGTGAGTATATGTCCAGGGACTACATGCCTTCTCGATCAGATCTAGGGACAGGTTCTTACCCTTCTGACTACCCTAGTCGTCGCATGAATGATGGATACTTGAGTGGCCGAGGTTCAGGTTCAGGTTCATATTATTAA 2352 46.22 MGDLPVNVEKSTKLIEKSLSIIIERSLCRLNTLPSQNAAFCLSTLSKRCALTLPVSVNRPPMPPRAAVRRPSTASALKKKPPREEKEEKEFVVGDMDRSERLELEDNDPQSDAEDDMGHYMGTEEECREQRIDGDDDLMGDMMEGEDEEEEDMGEDDVGGEHEEMMDGYEDEHHDLVKERRKRKEFEVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVFGTDRTARVAFADTFIEPDDEIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDSAVACVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHARGGYLVAQGSGRGFKAPWGSSSSRMDSWKFTGRGGRSMQTRGAYDGGLKRPVGPRDRHSMMEMVPTRVGSRRRFPSPESSFGRRSPVYEKSSTKREYIQRDESFSRPAVFARDPTERRYYKDNYSSRGSEYLDSPPRNVSRAAGHRAPLYEDDDYDRYLERPTNYHDGHRHDYGSISSSKRSHSAMEEVHSRYAEPPIRHSRARFDYGGSNSGLPYDDHYGSESTSERRMGRGSRLGYDGGMRSSSGHSRGMYETRTSTTGYRRVLADDISRGNEEGMYSSYDREYMSRDYMPSRSDLGTGSYPSDYPSRRMNDGYLSGRGSGSGSYY* 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17293807 17305617 - Vvi3g1026 Vvi3g1026 784701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1026 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 334 IPR000504 GO:0003723
Vvi3g1026 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 365 431 IPR000504 GO:0003723
Vvi3g1026 783 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 256 IPR000504 GO:0003723
Vvi3g1026 783 MobiDBLite consensus disorder prediction 77 106 - -
Vvi3g1026 783 MobiDBLite consensus disorder prediction 744 783 - -
Vvi3g1026 783 Gene3D - 124 261 IPR012677 -
Vvi3g1026 783 MobiDBLite consensus disorder prediction 60 158 - -
Vvi3g1026 783 Gene3D - 352 504 IPR012677 -
Vvi3g1026 783 CDD RRM_SF 268 335 - -
Vvi3g1026 783 Gene3D - 266 349 IPR012677 -
Vvi3g1026 783 MobiDBLite consensus disorder prediction 480 555 - -
Vvi3g1026 783 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN R-LIKE ISOFORM X1 62 783 - -
Vvi3g1026 783 MobiDBLite consensus disorder prediction 139 158 - -
Vvi3g1026 783 MobiDBLite consensus disorder prediction 113 138 - -
Vvi3g1026 783 SMART rrm1_1 364 439 IPR000504 GO:0003723
Vvi3g1026 783 SMART rrm1_1 267 346 IPR000504 GO:0003723
Vvi3g1026 783 SMART rrm1_1 187 260 IPR000504 GO:0003723
Vvi3g1026 783 CDD RRM_SF 188 259 - -
Vvi3g1026 783 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 62 783 - -
Vvi3g1026 783 MobiDBLite consensus disorder prediction 575 599 - -
Vvi3g1026 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 350 IPR000504 GO:0003723
Vvi3g1026 783 SUPERFAMILY RNA-binding domain, RBD 187 331 IPR035979 GO:0003676
Vvi3g1026 783 MobiDBLite consensus disorder prediction 664 711 - -
Vvi3g1026 783 SUPERFAMILY RNA-binding domain, RBD 355 468 IPR035979 GO:0003676
Vvi3g1026 783 CDD RRM_SF 365 439 - -
Vvi3g1026 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 264 IPR000504 GO:0003723
Vvi3g1026 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 363 443 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1026 - - - vvi:100266805 1338.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1026 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069609 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1