Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1028 ATGTCCTTCACTCTTGATGCTGCTGAGAAGTTTGGAGTGCCTGAAGTGGTGTTTTGGACAACAAGTGCATGTGGATTTCTGGGGTATAGGCAGTACAGGGACCTCCTTCAAAGAGGTCTTATACCACTCAAAGATGAAAGCTGTCTGACCAATGGGTACTTAGACACCATTGTTGACTCCACTCCTGGAATAATGAAAACCATCCGTCTGAGGGATTTTCCAGCTATCTTCAGAACTACAGACCCGAACGATATCATGCTCAACTTCATCATGGTGGAGGCAGAGAGAGCTAGTAAAGCTTCTGCCATCATTTTGAACACATTCGATGCATTGGAAAAAGATGTTTTGGATGCTCTCAGAGCCAATCTTCCTCCAGTTTACACCATCGGCCCTCTTCAGCATTTGGTTCATCAGATTTCAGACGATGGGCTGACAAATTTAGGCTCAAGTTTATGGAAAGAACAACCTGAATGTCTCCAATGGCTCGATTCCAAAGAACCCAACTCAGTAGTGTACGTGAATTTTGGGAGCATGATTGTGATGACACCTCAACATCTGACAGAGTTAGCTTGGGGACTAGCTAATAGCAACAAGCCCTTCCTATGGATCATAAGGCCTGATTTGCACCCGGCCGTAGGAGGGTTTGTAACACATTGTGGTTGGAACTCCACAAGCGAAAGCATATGTGGAGGAAGAGACAAGGTGGAAAAGCTTGTGAGAGAGCTGATGGATGGAGAGAAGGGTAAGAAGATGAAGAAGAAGGCCATGGAATGGAAGAAGTTGGCAGAAGAGGCCATTATGCTTGGTGGGTCTTCTTACAACAACTTCAACAAACTGTTGAGTGATCACAACCACAAGCGTTTGCTCAGGTCTAAAGGCCCCAACTATCTTGATGGCTTCCCTGATTTTCGCTTTGAGACTATCCCAGATGGCCTCCCACCAAGCGATGCTGATATCACCCAACCCACCGCTTCTGTCTGTGAATCCACCTCCAAGAACAGCTTGGCGCCCTTTTGCAACCTCATCTCTAAACTCAATGATCCTTCCTCCTCTGCTGGCCCGCCTGTGACCTGTATTGTGTCTGATGGTGTCATGTCCTTCACTCTTGATGCTGCTGAGAAGTTTGGAGTGCCTGAAGTGCTGTTTTGGACGACAAGCGCATGTGGGTTTCTGGGGTATAGGCACTACAGAGACCTCCTTCAAAGAGGTCTTATACCACTCAAAGATGAAAGCTGTCTGACCAATGGGTACTTAGATACCATTGTTGATTCCATTCCTGGAATGATGAAAACCATCCGTCTGAGGGATTTTCCAGCTTTCTTCAAAACTACAGACCCCAACGATATCATGCTCAACTTCTTGATCGCGGAGGCAGAGAGAGCTAATAAAGCTTCTGCTATCATTTTGAACACTTTCGATGCATTGGAAAAAGATGTTTTGGATGCCCTCAGAGCCACCCTTCCGCCATTTGTGGAAAGAACAACCGGAATGTCTCCAATGGCTCGATTCCAAAGAACCCAACTCAGTAGTGCCTGA 1536 46.35 MSFTLDAAEKFGVPEVVFWTTSACGFLGYRQYRDLLQRGLIPLKDESCLTNGYLDTIVDSTPGIMKTIRLRDFPAIFRTTDPNDIMLNFIMVEAERASKASAIILNTFDALEKDVLDALRANLPPVYTIGPLQHLVHQISDDGLTNLGSSLWKEQPECLQWLDSKEPNSVVYVNFGSMIVMTPQHLTELAWGLANSNKPFLWIIRPDLHPAVGGFVTHCGWNSTSESICGGRDKVEKLVRELMDGEKGKKMKKKAMEWKKLAEEAIMLGGSSYNNFNKLLSDHNHKRLLRSKGPNYLDGFPDFRFETIPDGLPPSDADITQPTASVCESTSKNSLAPFCNLISKLNDPSSSAGPPVTCIVSDGVMSFTLDAAEKFGVPEVLFWTTSACGFLGYRHYRDLLQRGLIPLKDESCLTNGYLDTIVDSIPGMMKTIRLRDFPAFFKTTDPNDIMLNFLIAEAERANKASAIILNTFDALEKDVLDALRATLPPFVERTTGMSPMARFQRTQLSSA* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17366988 17383201 + Vvi3g1028 Vvi3g1028 784703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1028 511 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 281 491 - -
Vvi3g1028 511 CDD GT1_Gtf-like 1 244 IPR002213 GO:0008194
Vvi3g1028 511 PANTHER GLYCOSYLTRANSFERASE 287 489 - -
Vvi3g1028 511 PANTHER GLYCOSYLTRANSFERASE 209 231 - -
Vvi3g1028 511 PANTHER GLYCOSYLTRANSFERASE 1 208 - -
Vvi3g1028 511 PANTHER GLYCOSYLTRANSFERASE 232 283 - -
Vvi3g1028 511 Gene3D Glycogen Phosphorylase B; 144 207 - -
Vvi3g1028 511 Gene3D Glycogen Phosphorylase B; 276 501 - -
Vvi3g1028 511 Gene3D Glycogen Phosphorylase B; 1 143 - -
Vvi3g1028 511 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 287 489 - -
Vvi3g1028 511 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 232 283 - -
Vvi3g1028 511 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 1 208 - -
Vvi3g1028 511 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 209 231 - -
Vvi3g1028 511 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 284 - -
Vvi3g1028 511 Gene3D Glycogen Phosphorylase B; 208 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1028 - - - vvi:100248624 434.106
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g1028 Vvi18g422 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1028 . . . . . . . . . . . . . . . . . Bhi05g00826 . . . . . . . . . . . . . . . . . Lsi03g00755 Csa07g00559 . Cme01g00233 . . Bda15g00496 . . . . . . . . . Cma19g00464 . . . . . . . . . . . Cla09g01523 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021161 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4