Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g103 ATGGCGACAGAGGTTGTGGTTTCCTTTGCGATTAAAAGGTTCGGTGACATGCTCATTCAAGAAGCAATTTTCTTGAAGGGGGTACGGGGGAAAGTCGAGAGGCTGAAGAAAGATCTAGGGGCCATGAAATGCTTCTTGGAAGAAGCGGAGATAAAGCAAGAAGAAGATTTAAGAGTGCGCAACTGGGTTTCTGAAATCCGTGATGCGGTTTATGATGTTGAGGACATCATAGACATGTTCATCCTGAATGCAGAGTCCCTGAGAACAGACTACTTTCACAAGCGTGTCTTCAAGAAGTTGATAAACCGCCATAAGGTTGGCAAGAAAATTGAAGACATCCAACTTACCCTCCAATACATCTCAAATAGGCGGGAGGCTCTCGGAATAAAAAATATTGGAGAAGGAACAAGCGGTTCGGGTCAAATACCAAAGGCGCCGCGTGATTTCTATGATTGTCGTGCCTGGATTTATGTATCCCAAGATTGTAGACCCAGAGAGGCTTATATGCAAATTATTAACCAGGTTTCTGCACCAACTAAAGAGCAAGCAGAAATGATAGAGAAGTATGGAGAGAACGAGTTGGGGGATTTCCTTCATGATCATTTGAAGGAGAAAAGATATTTGATAGTTCTGGATGACGTATGGACCTGTGCCGATTGGGATTTTCTTGCAAAAGTGAGCAGCAACGATCCTGATTGCCCTGGAAATGTTTTTCCCGATGGGAGTAACGGCAGCAGATTACTTCTTACAACTCGATATAAGGATGTTGCTTTGCATGCAGATGCTCGAACTATTCCCCATGAAATGCGGCTTCTATCCAAACAACAGAGCTGGAACTTGTTTTTTCGGAAGGCGTTCCTTGATACTGATAGCGAGAGATATCCTCCAGATTTGAAGGAACTTGGGGAAGAGATGGTGGACAAATGTAATGGTTTGCCATTGGCCATCGTTGTATTGGGGGGTTTGCTGTCAAGAAATATGTCACATACAGAATGGAAGCAAGTGCATGATAACATTAGTGCATACCTTGCTAAAGAAGGCCAAATGGGAGTAATGGCAATGCTAAACCTGAGCTACATCGACTTGCCCCATTACTTGAAACCGTGCTTTCTTCATTTAAGCCACTTCCCAGAAGATTATTTGATCTCCTCAAGAAAACTGCTCCTTTTATGGACTGCTGAGGGTTTTGTGCCAGAACAAGATGACGGAAGAATGAAAGACATGGCTGAGGTTTACTTGAATGAGTTAAGCAATAGAAATTTGATTCAAGTAGTGAGAAGGAGTGTTAATGCAAGGGTTACGAAATGTCAGGTTCATGACCTTGTACGAGAGTTGGCCATTGAAAAGGCAAAAGAGCAAAACTTCATTGGAACTAATATCGCAGATCCTCTATCCCCCTCCACCAGTTTATCTCTCTTTTCACCTAAATCCCGCCGTCGAAGTATTTATTCTGACTTTGAGAGTTATGCTTCCATTGAACATTTAACTCCATATCTTCGTTCTCTCTTATTTTTCAATTTGGGGAAAAATTGTAGAGCATCACAACTAGATTTCATTGCCAAATGCTTCAAAGTGCTTAGAGTGTTAGATTTGGAAGGTTTAGAAATTGAATGCCTACCCAGTATAATTGGGGAACTGATTCATTTAAGGTACTTGGGATTAAGGCATACTGGTCTAAAAATGCTTCCACCATCTATAGGCAACCTGAGGAGTTTGCAGACTTTGGAGATAAACAATCTTAGACAAGTGCCAAATGTGATATGGAAGATGAAAAACATGAGATATCTTTACATGGAGGGGCAAGAGGAAGATGTTCCACTGCAAATTGATACGTTGCAAAATCTTCAAATTCTATCGGGCATAACCTTCGACCAATGGATCAAGAACGATTCAAGCAACTTAACTTGTCTTGGGAAATTGAAATTAGAAGGAAGGTGTGACGTAGAAGGAGTTGAGTTTTTAAACTCCATTGCCAAGCTACTTAGTCTTAAATCCTTGTACCTTAAGGCATCAGATGAGTCCAACATTCCACCCTTTGCCATAAACTCTTGCCTCCATCTCTCTAAGTTGGACATAAAGGGACACATGCAAAAATTCCCTGAAATCCATGAATTCTCACAAAGTCTCACACAATTGACATTGGAAGCATCCAGGCTAGATTGTGATCATATGATGAAAAACATGAGATATCTTTACATCGAGGGACAAGAGGAAGATGTTCCACTGCAAATTGATACATTGCAAAATCTTCAAATTCTGTCGGGCATAACCTTCAACCAATGGATTCAAAACAATTCAATTGAGTTTGGTGACATGCTCATTCAAGAAGCAATTTTCTTGAAGGGGGTACGGGGGAAAGTCGAGAGGCTGAATAAAGATCTAGGGGCCATGAAATGCTTCTTGGAAGAAGCGGAGAAGAAGCAAGAAGAAGATGTAAGAGTGCGCAACTGGGTTTCTGAAATCCGTGATGCGGTTTATGATGTTGAGGACACCATAGACATGTTCATCCTGAATGCAGAATCCCTGAGAACAGACTACTTTCTCAAGGGTGTCTTCAAGAAGTTGATAAACCGCCATAAGGCTCTCGGAATAAAAAATATTGGAGAAGGAACAAGCGGTTCGGGTCAAATGTTGCGGGATCTAAGACGCTCCTCTCCTCGTGCAGAAGAACTTGTCATCGTGGGCCTTACACAGGAGGCAGATAAGCTAGTGAAGCAGCTCACCGTAGGAGACCAAAGGCGCCGCGTGATTTCTTTGGTAGGAATGGGCGGCATAGGCAAAAGCACCCTTGCCAAGAAGGTTTATATGCAAATTATTAACCAGGTTTCTGCACCAACTAAAGAACAAGCAGAAATGATAGAGAAGTATGGAGAGAACGACAACGATCCTGATTGCCTTGGAAATGTTTTTCCCGATGGGAGTAACGGCAGCAGATTACTTCTTACAACTCGATATAAGGATGTTGCTTTGCATGCAGATGCTCGAACTATTCCCCGTGAAATGAGGCTTCTTTCGAAAAAACAGAGATGGGACTTGTTTTGTCGGAAGGCGTTCCTTGATGCTGATAGCGAGAGCTATCCTCCAGATTTGAAGGAACTTGGGGAAGAGATGGTGGACAAATGTAATGGCTTGCCATTGGCCATCGTTGTATTGGGGGGTTTGCTGTCAAGAAATATGTCACATACAGAATGGAAGAAGGTGCACGATAACATTAGTGCATACCTTGCTAAAGAAGGCCAAATGGGAGTAATGGCAATGCTAAACCTGAGCTACATCGACTTGCCCCATTACTTGAAACCGTGCTTTCTTCATTTAAGCCTCTTCCCAGAAGATTATGTGATCTCCTCGAGAAAACTGCTCCTTTTATGGACTGCTGAGGGTTTTGTGCCAGAACAAAATGAACGAAGAATGAAAGACATGGCTGAGGTTTACTTGAATGATTTATCTCTCTTTTCATCTAAATCCCGTCGACGAAGTATTTATTCTGAATTTGAGAGGTATGCTTCCATTGAACATTTAACTCCATATCTTCGCACTCTCTTATTTTTCAATCTGGGGAAAAATTGTAGAGCATCACAACTAGATTTCATTGCCAAATGCTTCAAAGTGCTTAGAGTGTTGGATTTGGAAGGTTTAGAAATTGAATGCCTACCAAGTATAATTGGGGAACTGATTCATTTAAGGTACTTGGGATTAAGGCATAATGGTCTAAAAATGCTTCCACCATCTATAGGCAACCTAAAGAGTTTGCAGACTTTGGATATAAACAATCTTAAAGAAGTGCCAAATGTGATATGGAAGATGAAAAACATGAGGTATCTTTATATTGAGGGGCAAGAGGAAGATGTTCCACTGCAAATTGATACATTGCAAAATCTTGAAATTCTATCTTGCATAACCTTCAACCAATGGATCAAGAATGATTCAAGCAACTTGACTTGTCTTGAGAAATTGAAATTAGAAGGAAGATGTGAGGTAGAAGGGGTTGTGTTTTCAAACTCCATTGCCAAGCTACCTAGTCTTAAATCCTTGTACCTTAAGGCATCAGATGAGTCTAACATTCCACCCCTTGCCATAAACTCTTGCCTCCATCTTTCTAAGTTGGACATAAAGGGACACATGCAAAAATTGCCTGAAACCGTTGAATTCTCACCAAATCTTACACAATTGACAATGGAAGCATCTAGGCTAGGTTGTGATCCTATGCCTATTTTAGAGAAGCAACCAAAATTGTTGATTCTTAGATTAAGGGCAAACACATACCTTGGAAAGAAAATGCAAGTGTCTGCAAATGGGTTTCCTCAACTCAAAATACTTCAACTTTCAGAGTTAAAAGAATTGACCAAGTTGAATATAGGGCAAGGTGCATTGCCATGGCTTATGCAATTACAAATTCGTGATAAGGTGAAGATCTTAGGATTTAATGGGCTTCTAAATCTAGTGGAGCTAAACATTATGGGTGGATCATTTCTTAACATGAGAATCGCGAAGTCGCTCTTTTCGAATGGTGTACCTCATCCTTGGCATAGTACAAGATTGGAGTTAGAATTTACCGCGAAAAAGGTAAGCTTGGAAGTCTGGAATTCACTTTTACCCTTGGTGATTGTTGGGGTGTATAAATGCATGTTTTTGTTCCTTTACGTGGATGTGATTTCTACCAATTCAGCCTATTTTTTTTTTTAG 4683 40.96 MATEVVVSFAIKRFGDMLIQEAIFLKGVRGKVERLKKDLGAMKCFLEEAEIKQEEDLRVRNWVSEIRDAVYDVEDIIDMFILNAESLRTDYFHKRVFKKLINRHKVGKKIEDIQLTLQYISNRREALGIKNIGEGTSGSGQIPKAPRDFYDCRAWIYVSQDCRPREAYMQIINQVSAPTKEQAEMIEKYGENELGDFLHDHLKEKRYLIVLDDVWTCADWDFLAKVSSNDPDCPGNVFPDGSNGSRLLLTTRYKDVALHADARTIPHEMRLLSKQQSWNLFFRKAFLDTDSERYPPDLKELGEEMVDKCNGLPLAIVVLGGLLSRNMSHTEWKQVHDNISAYLAKEGQMGVMAMLNLSYIDLPHYLKPCFLHLSHFPEDYLISSRKLLLLWTAEGFVPEQDDGRMKDMAEVYLNELSNRNLIQVVRRSVNARVTKCQVHDLVRELAIEKAKEQNFIGTNIADPLSPSTSLSLFSPKSRRRSIYSDFESYASIEHLTPYLRSLLFFNLGKNCRASQLDFIAKCFKVLRVLDLEGLEIECLPSIIGELIHLRYLGLRHTGLKMLPPSIGNLRSLQTLEINNLRQVPNVIWKMKNMRYLYMEGQEEDVPLQIDTLQNLQILSGITFDQWIKNDSSNLTCLGKLKLEGRCDVEGVEFLNSIAKLLSLKSLYLKASDESNIPPFAINSCLHLSKLDIKGHMQKFPEIHEFSQSLTQLTLEASRLDCDHMMKNMRYLYIEGQEEDVPLQIDTLQNLQILSGITFNQWIQNNSIEFGDMLIQEAIFLKGVRGKVERLNKDLGAMKCFLEEAEKKQEEDVRVRNWVSEIRDAVYDVEDTIDMFILNAESLRTDYFLKGVFKKLINRHKALGIKNIGEGTSGSGQMLRDLRRSSPRAEELVIVGLTQEADKLVKQLTVGDQRRRVISLVGMGGIGKSTLAKKVYMQIINQVSAPTKEQAEMIEKYGENDNDPDCLGNVFPDGSNGSRLLLTTRYKDVALHADARTIPREMRLLSKKQRWDLFCRKAFLDADSESYPPDLKELGEEMVDKCNGLPLAIVVLGGLLSRNMSHTEWKKVHDNISAYLAKEGQMGVMAMLNLSYIDLPHYLKPCFLHLSLFPEDYVISSRKLLLLWTAEGFVPEQNERRMKDMAEVYLNDLSLFSSKSRRRSIYSEFERYASIEHLTPYLRTLLFFNLGKNCRASQLDFIAKCFKVLRVLDLEGLEIECLPSIIGELIHLRYLGLRHNGLKMLPPSIGNLKSLQTLDINNLKEVPNVIWKMKNMRYLYIEGQEEDVPLQIDTLQNLEILSCITFNQWIKNDSSNLTCLEKLKLEGRCEVEGVVFSNSIAKLPSLKSLYLKASDESNIPPLAINSCLHLSKLDIKGHMQKLPETVEFSPNLTQLTMEASRLGCDPMPILEKQPKLLILRLRANTYLGKKMQVSANGFPQLKILQLSELKELTKLNIGQGALPWLMQLQIRDKVKILGFNGLLNLVELNIMGGSFLNMRIAKSLFSNGVPHPWHSTRLELEFTAKKVSLEVWNSLLPLVIVGVYKCMFLFLYVDVISTNSAYFFF* 1561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1082215 1096163 - Vvi3g103 Vvi3g103 783778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g103 1560 Gene3D - 877 945 IPR027417 -
Vvi3g103 1560 PRINTS Disease resistance protein signature 916 931 - -
Vvi3g103 1560 PRINTS Disease resistance protein signature 1041 1055 - -
Vvi3g103 1560 PRINTS Disease resistance protein signature 1245 1261 - -
Vvi3g103 1560 CDD RX-CC_like 770 862 IPR038005 -
Vvi3g103 1560 SUPERFAMILY L domain-like 438 753 - -
Vvi3g103 1560 Gene3D - 359 450 IPR036388 -
Vvi3g103 1560 Gene3D - 1091 1165 IPR036388 -
Vvi3g103 1560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1105 IPR027417 -
Vvi3g103 1560 PANTHER - 797 1464 - -
Vvi3g103 1560 PANTHER - 42 736 - -
Vvi3g103 1560 Gene3D - 141 265 IPR027417 -
Vvi3g103 1560 PANTHER DISEASE RESISTANCE PROTEIN RP 42 736 IPR044974 GO:0006952
Vvi3g103 1560 PANTHER DISEASE RESISTANCE PROTEIN RP 797 1464 IPR044974 GO:0006952
Vvi3g103 1560 CDD RX-CC_like 4 122 IPR038005 -
Vvi3g103 1560 Gene3D - 1003 1090 IPR042197 -
Vvi3g103 1560 Gene3D - 271 358 IPR042197 -
Vvi3g103 1560 Coils Coil 787 807 - -
Vvi3g103 1560 Gene3D Ribonuclease Inhibitor 1187 1305 IPR032675 -
Vvi3g103 1560 Gene3D Ribonuclease Inhibitor 1306 1487 IPR032675 -
Vvi3g103 1560 Gene3D Ribonuclease Inhibitor 509 768 IPR032675 -
Vvi3g103 1560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 373 IPR027417 -
Vvi3g103 1560 Gene3D - 769 865 - -
Vvi3g103 1560 Gene3D - 6 114 - -
Vvi3g103 1560 Pfam NB-ARC domain 149 359 IPR002182 GO:0043531
Vvi3g103 1560 Pfam NB-ARC domain 965 1091 IPR002182 GO:0043531
Vvi3g103 1560 Pfam NB-ARC domain 898 937 IPR002182 GO:0043531
Vvi3g103 1560 SUPERFAMILY L domain-like 1147 1487 - -
Vvi3g103 1560 Pfam Rx N-terminal domain 6 88 IPR041118 -
Vvi3g103 1560 Pfam Rx N-terminal domain 770 843 IPR041118 -
Vvi3g103 1560 SMART LRR_typ_2 1224 1247 IPR003591 -
Vvi3g103 1560 SMART LRR_typ_2 546 569 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g103 - - - vvi:100852727 1214.13
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .