Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g104 ATGGGCGGCATAGGCAAAACCACCCTTGCCAAGACGGTTTATAAAAATGAAGAAATTGCGAAACACTTTCCAGATTGTTGTGCCTGGGTTTATGTGTCCCAACCTTGTAGACCTAAAGACGTTTATATGCAAATTATTAAACAGGTTTCTACATCCACTCAAGAGGAAGTAGAGAGGATGCAGAAATGGGAAGAGCGCGCGTTGGGGGATTTCCTTTATGAACATCTGACGAATAAAAGATATTTAATAGTTCTGGATGATGTATGGAGCTGTGACGATTGGTATTGTCTTGCAAAAGTGAGCCACAGAAATCGCCATGGAAGCGTTGCATACCTTTCTGACAAAGACCACGTGGGAGTAATGGAAATGCTAAATTTGAGCTACATCAGTTTGCCCCATTACTTGAAACCGTGCTTTCTTTATTTAAGCCTTTTCCCAGAAAATTATGTGATTTCCAAAAGAAAACTGCTCCTTCTATGGATCGCTGAGGGTTTTGTCCTAGGGCAAAATCAACAAAGCATGAAAGGCATGGCTGAGAATTCCTTGGACGAGTTAATCCATAGAAACTTGATTCAAGTCGTCAGAAAAAGTGTTAATGCGAGGGTTATGGAATGTCGAGTTCATTACTATGTACGAGACTTGGCTATTCGAAAGGCAAAAGAGCAAAACTTCATTGGAACTAATGCAGATCCTCTATCCGCCTCAACTAGTTCATCTCTCTCTTCATACAAATCCCGTCGGCAAAGTATTTATTCCGACTTTGAGAGGTATGCTGCCATTGAACACTCAACTCCATATCTTCGCTCTCTCTTATTTTTCAATTTGGGGCATGGAACTAGTAGAACATTGCAACTAGAGTTTATTGGCAAATGCTTCAAAGTGCTTAGGGTGCTAGATTTGGAAGGTTTAGAGATCAAAAGCCTACCAAGTATAGTTGGGAAACTGATTCATTTAAGGTACTTGGGGTTAAGGCTTATGGGTGTGAAAATGCTTCCATCATCTATAGGCAACTTAAGGAGTTTGCAGACTTTGGATGTGAAAAATCTCAAACGAGTCCCAAATGTGATATGGAAGATGATAAACTTGCGATATGTTTATATAGAGGGGCAAGAGGATGATGTGCCATTGAAAATTGATACTCTGCAAAATCTTCGGATTCTATCAGGCATAAGCTTCAAGCAGTGGAGCCAGAATGATTCAAGCAAGTTAACTTGTCTTGAGAAATTGAAATTAGAAGCAAGATGTGATATAGAACGGGATGAGTTTTCAAACTCCATTGCCAGGTTGCTTAATCTTACATCCTTGTACCTTAAGGCATCGGAAGAGTCCATCATTCCAGCCGGCCTTATCATGAACTCTTGGCTCAAACTCTCTAAGCTCGAAATAAAAGGACGTATGTTGTTGTCCGAAGCCGGTCAATTCCCTCCAAATCTCATACAATTGACATTGGAAGCGTCTAAGTTAAATTATGATGTTGTGCCCATTTTGGGGAAACTTCCAAAGTTGTTGAATCTTAGATTAAGGGCAGAGTCATATCTTGGAGAGGAAATGCATGTGTCTGCAAGCTGGTTTGTTCGACTCAAAGTACTTCAAATTGATGAGTTAACTGGATTGACCAGGTTGAATATAGACGAAGGTGCACTGCCATGGCTTAAGCAATTACAAGCTTACTATGGAACGAAAATCTTGGGCATTAATAATCTCCTAAATCTGGTGGATTCAAGAGTCTTGATTGAACGAGATCATTTGTTAGTGCCTATCCAGATGCCTTACCCCAACAGCCCCATACATTTTCCTTGGGATTGTGCATGGTAA 1815 40.5 MGGIGKTTLAKTVYKNEEIAKHFPDCCAWVYVSQPCRPKDVYMQIIKQVSTSTQEEVERMQKWEERALGDFLYEHLTNKRYLIVLDDVWSCDDWYCLAKVSHRNRHGSVAYLSDKDHVGVMEMLNLSYISLPHYLKPCFLYLSLFPENYVISKRKLLLLWIAEGFVLGQNQQSMKGMAENSLDELIHRNLIQVVRKSVNARVMECRVHYYVRDLAIRKAKEQNFIGTNADPLSASTSSSLSSYKSRRQSIYSDFERYAAIEHSTPYLRSLLFFNLGHGTSRTLQLEFIGKCFKVLRVLDLEGLEIKSLPSIVGKLIHLRYLGLRLMGVKMLPSSIGNLRSLQTLDVKNLKRVPNVIWKMINLRYVYIEGQEDDVPLKIDTLQNLRILSGISFKQWSQNDSSKLTCLEKLKLEARCDIERDEFSNSIARLLNLTSLYLKASEESIIPAGLIMNSWLKLSKLEIKGRMLLSEAGQFPPNLIQLTLEASKLNYDVVPILGKLPKLLNLRLRAESYLGEEMHVSASWFVRLKVLQIDELTGLTRLNIDEGALPWLKQLQAYYGTKILGINNLLNLVDSRVLIERDHLLVPIQMPYPNSPIHFPWDCAW* 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1111136 1113257 - Vvi3g104 Vvi3g104 783779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g104 604 Gene3D - 1 110 IPR027417 -
Vvi3g104 604 PRINTS Disease resistance protein signature 75 89 - -
Vvi3g104 604 PRINTS Disease resistance protein signature 336 352 - -
Vvi3g104 604 SUPERFAMILY L domain-like 249 572 - -
Vvi3g104 604 Pfam NB-ARC domain 1 98 IPR002182 GO:0043531
Vvi3g104 604 PANTHER - 117 562 - -
Vvi3g104 604 PANTHER - 1 108 - -
Vvi3g104 604 Gene3D Ribonuclease Inhibitor 253 574 IPR032675 -
Vvi3g104 604 PANTHER DISEASE RESISTANCE PROTEIN RP 1 108 IPR044974 GO:0006952
Vvi3g104 604 PANTHER DISEASE RESISTANCE PROTEIN RP 117 562 IPR044974 GO:0006952
Vvi3g104 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 142 IPR027417 -
Vvi3g104 604 Gene3D - 122 219 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g104 - - - vvi:109121502 957.977
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g104 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014648 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 13 16