Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1042 ATGGTGTGTACTGCAGCTAAAATAAATCTCAAATATATACTACTCATTATATGGTGCCTAACCCTTAGCCCTGCCGCTGCTCTCACTTACTTAAACAATTCCTGTCCACAGACTCCAAACACAACTGCTGCTATCAGCCCAAATACCACCTACCAAACCAATCTCAATTTGCTTCTCTCCTTTCTTTCTTCAAATGCTACCATCGACTCCGGATTCTACAACGCCACCGTGGGGCGGGAACCTTCCGATGTAGTTTACGGTCTTTTTCTCTGCCGAGGTGATCTTAGCCCTCAACTCTGTCAAGAGTGTGTGGGGGCTGCCACTAACAAGTCACGCGACCAGTGTCAGGGAATAAAGGCGGCTGTTATTTGGTATGACGAGTGCATATTGCATTACTCAAATCAGTCCATCTTCTCCACACTCATAGAAGAGCCGATACTGATGATGCGCAACACGGTGAATCTCACAGACCCAGATGGATTCAATCGGACACTGCAAGGTATAATGGACAGCATAAGAACTCAAGCTGTGAATGATCGATCTGGCAAGAAGTACTATGCCACCAAAGAAGAAAATTACTTAGCGCCACAAATGGTACAAAGGGTGTATAGCCTGGTGCAATGCACACCAGATTTATCCGCCACCCAGTGCAATCTATGTCTTTTGGGAGTGGAAGACTATCTTCAAGAATGCTGCAGTGCACGTCAAGGGGCAAGGGTCGTGTTTCCAAGCTGTAGTTTTAGATATGAATTTTATCCTTTCTACACAGCTGAGGCAGGGGCCGAAGCACCAGCTCCTACACCTCTGCTTCTTCCTCCTGCTCCACCTTCACAACCCACCACTGAAGGAAAAGGTGGAATATCTTCACAAACAATTATCACCATTGTTGTTCCAACAGTTGTCTCTGTGGGGATCTTTTATATTTTATGCTACTGCTTCATAAGCAGGAAAGCAAGGAAGAAATACAATACAGAAGAGGAAAATGTGGAGAATGATATCACGACCGTGCAGTCATTGCAATTTGATTTTGGTACACTTCAAGCTGCTACAAATAACTTCTCTGATGATAACAAGATTGGTCAAGGTGGATTTGGTGATGTATACAAGGGTACACTTTCTAGTGGTCAAGAAATTGCTATAAAGAGGCTATCTAGAAGTTCAGTGCAAGGTGCAGTAGAATTCAAGAATGAGATTGTGTTGGTAGCCAAGCTTCAACACAGAAACCTAGTGAGGTTATTGGGATTTTGCTTGGAAGGGGAAGAGAAGATACTTGTCTATGAATATGTGCCCAACAAAAGCCTTGACTGCTTTGTGTTTGATGGTGATATGAACCCAAAAATTTCGGATTTTGGCATGGCAAGGATTGTTGGAGTAGATCAAACTCAAGGAAATACCAACAGAGTTGTTGGCACATATGGCTACATGTCTCCTGAGTATGCAATGCGTGGACACTTCTCTGCTAAGTCAGATGTATACAGTTTTGGTGTCCTCGTTTTGGAGATAATAAGTGGCAAGAAGAACGGTAGCTTCTATGAATCAGGCCAAACTGAGGGCCTTCCAAGCTATGCATGGAAACTTTGGAGGGATGGTACACCCCTGGAATTGATGGACCCAATGATGGGGGACTCTTACGCAAGAAATGAAGTCATTAGATGCATACATATGGGTTTATTATGTGTTCAAGAAGATCCTGATGACAGACCATCCATGGCATCAGTAGTCCTCATGCTCAGCAGTTACTCTGTTACTCTACCATTGCCTCAACAACCAGCATTCTTCATTCGCAGTGGGACGCAGTCGGGCTTTCCAATAAATGCACTGGAATCAGATCAATCTGCAAGCAAGTCAACGCCATGGTCTCTGAATGAAACATCGATTTCTGAACTATATCCTAGGTAG 1899 43.92 MVCTAAKINLKYILLIIWCLTLSPAAALTYLNNSCPQTPNTTAAISPNTTYQTNLNLLLSFLSSNATIDSGFYNATVGREPSDVVYGLFLCRGDLSPQLCQECVGAATNKSRDQCQGIKAAVIWYDECILHYSNQSIFSTLIEEPILMMRNTVNLTDPDGFNRTLQGIMDSIRTQAVNDRSGKKYYATKEENYLAPQMVQRVYSLVQCTPDLSATQCNLCLLGVEDYLQECCSARQGARVVFPSCSFRYEFYPFYTAEAGAEAPAPTPLLLPPAPPSQPTTEGKGGISSQTIITIVVPTVVSVGIFYILCYCFISRKARKKYNTEEENVENDITTVQSLQFDFGTLQAATNNFSDDNKIGQGGFGDVYKGTLSSGQEIAIKRLSRSSVQGAVEFKNEIVLVAKLQHRNLVRLLGFCLEGEEKILVYEYVPNKSLDCFVFDGDMNPKISDFGMARIVGVDQTQGNTNRVVGTYGYMSPEYAMRGHFSAKSDVYSFGVLVLEIISGKKNGSFYESGQTEGLPSYAWKLWRDGTPLELMDPMMGDSYARNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPAFFIRSGTQSGFPINALESDQSASKSTPWSLNETSISELYPR* 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17566822 17574771 + Vvi3g1042 Vvi3g1042 784717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1042 632 Pfam Protein tyrosine and serine/threonine kinase 356 438 IPR001245 GO:0004672|GO:0006468
Vvi3g1042 632 Pfam Protein tyrosine and serine/threonine kinase 444 575 IPR001245 GO:0004672|GO:0006468
Vvi3g1042 632 Gene3D - 144 254 IPR038408 -
Vvi3g1042 632 Gene3D - 29 136 IPR038408 -
Vvi3g1042 632 Gene3D Phosphorylase Kinase; domain 1 313 428 - -
Vvi3g1042 632 ProSiteProfiles Protein kinase domain profile. 353 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1042 632 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Vvi3g1042 632 SUPERFAMILY Protein kinase-like (PK-like) 339 597 IPR011009 -
Vvi3g1042 632 MobiDBLite consensus disorder prediction 613 632 - -
Vvi3g1042 632 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 440 - -
Vvi3g1042 632 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 439 631 - -
Vvi3g1042 632 Gene3D Transferase(Phosphotransferase) domain 1 430 584 - -
Vvi3g1042 632 ProSiteProfiles Gnk2-homologous domain profile. 143 254 IPR002902 -
Vvi3g1042 632 ProSiteProfiles Gnk2-homologous domain profile. 33 137 IPR002902 -
Vvi3g1042 632 Pfam Salt stress response/antifungal 43 135 IPR002902 -
Vvi3g1042 632 Pfam Salt stress response/antifungal 154 251 IPR002902 -
Vvi3g1042 632 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 37 440 - -
Vvi3g1042 632 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 439 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1042 - - - vvi:100242699 1140.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000015 3 19 7 13 7 16 3 13 12 17 12 14 9 15 15 13 16 4 8 10 15 7 11 9 5 24 13 11 18 8 347
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76558 PF07714 PK_Tyr_Ser-Thr 5.80E-14 CL0016 Vvi PK