Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1046 ATGTCTGCTGATCATTTGCAGTTCTTGAAGAACAAGTTCATTCTGGACTTGGAAGACGCGGAGGAGGAACACTCCGGGGAAAATGAGATCCCCCTTCTCGCTCATTTTCTACAGATTAGAGATGTGTTGAAAGCAAAGGACATCACGGCATCTACACCCATCAGATTGAAGAATTGTCTATACAACGCCATCAGCGCATTAGAAGAGTGCGTGGTGTTGTCGGAGAAGCGTGAGCCCCGAAAGAAGAAGGATGGTCCGATGCATGGATACACTCTGGCGGAGCATTGGATTTTATGCAAAACCAGAAGGTTGTTGGTTCAAGTAAAGAGAAAGCTTACTGCTCCGGCTGATCCCATTATTCCTGGTATGACCGACATGGCCGCAAGTTCATCCTACACCTCCTTACAAGTTATTCCAAGACCAAACTCTAGGAATTTTGATCCCGACTATTGTCCGGGTTTTGATGAACAAGTAAACACAATTTTAGATCGACTTGAGAATACAGGGGATGGGTTTCAGGAAATCGGAATCGTGGGGATCGGGGGATCGGGTAAAACCACTCTCGCCCAATTGGTTTTTACTAAAATCGATGGGTATCTACGGGATAACAGAATTTGGATCTGCTTATTCCCGAAACTGAGTGGAGATGTGGACTTCAAGAAGATGATAAAAGACATGTTGAAGCAGTGCAGGGCAGCATCTCGGGAAGTAGAAGTAGAAGAGCTGTTGGAGAATCTTGGGAAAGCTTTGAAGGGTAAAAGGTATTTGATGGTGTTGGACGGCGTCTGGGACATCAACATCCACTGGTATTTCAAGTTAAAGGACAAGTTGAAGTCTTTGAGTGGTGATGGTAATGGTGATGGGCATGTCATCATTACAAGCCGACTCCCCCACAAAGCAAGAATGATCGTGGGCCCTCACAATCTGTATCACATACAGCCTCCCATGGGGCACATGTCGCGATTCGAAGGTATATTGGGTAGGCTTGAAAGGTATAAGTTGAAATTGAAGGATGAGGCTGTAGAGCAATGTGATGGCCTCCCATTAGCAATGCACACATTGGCACCAGTGATTGAAGACCAGATCCTGGGAAAAGAGTAA 1101 45.69 MSADHLQFLKNKFILDLEDAEEEHSGENEIPLLAHFLQIRDVLKAKDITASTPIRLKNCLYNAISALEECVVLSEKREPRKKKDGPMHGYTLAEHWILCKTRRLLVQVKRKLTAPADPIIPGMTDMAASSSYTSLQVIPRPNSRNFDPDYCPGFDEQVNTILDRLENTGDGFQEIGIVGIGGSGKTTLAQLVFTKIDGYLRDNRIWICLFPKLSGDVDFKKMIKDMLKQCRAASREVEVEELLENLGKALKGKRYLMVLDGVWDINIHWYFKLKDKLKSLSGDGNGDGHVIITSRLPHKARMIVGPHNLYHIQPPMGHMSRFEGILGRLERYKLKLKDEAVEQCDGLPLAMHTLAPVIEDQILGKE* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17711833 17712934 + Vvi3g1046 Vvi3g1046 784721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1046 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 358 IPR027417 -
Vvi3g1046 366 Pfam NB-ARC domain 156 295 IPR002182 GO:0043531
Vvi3g1046 366 PANTHER DISEASE RESISTANCE PROTEIN RP 5 355 IPR044974 GO:0006952
Vvi3g1046 366 Gene3D - 134 311 IPR027417 -
Vvi3g1046 366 PRINTS Disease resistance protein signature 174 189 - -
Vvi3g1046 366 PRINTS Disease resistance protein signature 249 263 - -
Vvi3g1046 366 PRINTS Disease resistance protein signature 344 358 - -
Vvi3g1046 366 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 4 5 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1046 - - - vvi:104878927 720.309
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .