Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1048 ATGGCGGAGACGACGGAATTGAGAGTGTACAACACCATGACTCAGCAGAAGGAGATCTTCAAGCCCGTTGTCGATGGCAAAGTGTCCATGTACGTCTGCGGTGTCACCGCTTACGACCTCAGTCATCTTGGCCACGCCCGCGCCGCCGTCTGCTTTGACGTCCTCTACCGATATCTACAACACTTGGGCTATGAAGTTACTTATGTACGAAATTTTACAGATGTTGACGACAAGATTATCCGGAGGGCAAATGAGCTAGGAGAGAATCCATTGACTCTGAGTAGCCGCTTTTGCCAGGAATATCTTGATGACATGACTGATCTCCAGTGCCTAACCCCTACCCAACAGCCACGTGTTTCTGATCACATGGACCAGATCAAGGATATGATAACTCAGATTATCAACAATGATTGTGCATACATAATTGATGGGGACGTGTACTTTGCTGTTGATAAATCCCCAAATTATGGCAGATTATCTGGGCGGAAGCTGGAAGATAACAGAGCTGGTGAACGTGTTGCTGTTGATTCAAGAAAGCGAAATCCAGCTGACTTCGCATTGTGGAAGGCTGCAAAGCCTGATGAGCCAAGTTGGGACAGCCCATGGGGTCCTGGAAGACCGGGATGGCACATAGAGTGCAGTGCAATGAGTGCACATTATTTGACCTTCAAATTTGATATTCATGGTGGTGGAATAGATTTGATATTTCCACATCATGAAAATGAAATTGCCCAGAGTTGTGCAGCTTGCCAAGAAAGCAATGTTAGTTACTGGATGCATAATGGGCATGTCACCAACAACAATGAGAAAATGTCAAAGTCATTGGGGAATTTTTTCACAATCCGGCAGATTACCGATCTGTACCATCCACTGGCATTGAGATACTTCTTGCTGGGTACACACTATCGATCTCCTGTCAATTACTCAATTGCACAGCTGGAAATTGCATCAGAAGCTGTATTCTATATATATCAGACATTGCGAGATTGTGAGGATACTTTGTCTCCATTTCAAGAAGTAAATGGGCAAAATGTTTGCATTACTCCTGCTGCCAAAGACTGCATCAGTAAGCTACAGACTGATTTTCAGACAAAGATGTCTGATGACTTGTCCACTCCGCATATATTGAATGCTTCTCTTCAAGAAGCCTTGAGGTTCATAAATAGTGGTTTAAACATGCTTAAGAAGAAGCAACAGAAGCAACAGCAATTATCAGCAGTTCAGTCCCTCACTGAATTAGAAAAAGAAGTCAAGGGAGTTCTCAGTGTTCTGGGATTGCTGTCCACTTTGGCTTATTCTGAGGTTTTGCAGCAGCTGAAAGGTAAGGCATTAAGGAGAGCCGGGATGATTGAAGATGATGTTTTGCATCTCATTGAAGAAAGAGCACTAGCAAGGAAAAATAAGAATTTCTCAAGGGGTGATCAGATCAGAGCTGATTTGGCTTCTAAGGGCATTGCTCTCATGGATGTGGGCAAGGAAACAATTTGGAGGCCGTGTGTCCCAGTCGAACAAGAACCACAGGCACCAGCCGCCTCAACTTAA 1542 44.36 MAETTELRVYNTMTQQKEIFKPVVDGKVSMYVCGVTAYDLSHLGHARAAVCFDVLYRYLQHLGYEVTYVRNFTDVDDKIIRRANELGENPLTLSSRFCQEYLDDMTDLQCLTPTQQPRVSDHMDQIKDMITQIINNDCAYIIDGDVYFAVDKSPNYGRLSGRKLEDNRAGERVAVDSRKRNPADFALWKAAKPDEPSWDSPWGPGRPGWHIECSAMSAHYLTFKFDIHGGGIDLIFPHHENEIAQSCAACQESNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITDLYHPLALRYFLLGTHYRSPVNYSIAQLEIASEAVFYIYQTLRDCEDTLSPFQEVNGQNVCITPAAKDCISKLQTDFQTKMSDDLSTPHILNASLQEALRFINSGLNMLKKKQQKQQQLSAVQSLTELEKEVKGVLSVLGLLSTLAYSEVLQQLKGKALRRAGMIEDDVLHLIEERALARKNKNFSRGDQIRADLASKGIALMDVGKETIWRPCVPVEQEPQAPAAST* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17775737 17787000 + Vvi3g1048 Vvi3g1048 784723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1048 513 CDD CysRS_core 8 309 IPR032678 -
Vvi3g1048 513 PRINTS Cysteinyl-tRNA synthetase signature 226 247 IPR024909 -
Vvi3g1048 513 PRINTS Cysteinyl-tRNA synthetase signature 66 75 IPR024909 -
Vvi3g1048 513 PRINTS Cysteinyl-tRNA synthetase signature 195 213 IPR024909 -
Vvi3g1048 513 PRINTS Cysteinyl-tRNA synthetase signature 30 41 IPR024909 -
Vvi3g1048 513 PANTHER CYSTEINE--TRNA LIGASE 1, CYTOPLASMIC-RELATED 9 501 - -
Vvi3g1048 513 Pfam tRNA synthetases class I (C) catalytic domain 20 316 IPR032678 -
Vvi3g1048 513 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 350 498 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g1048 513 TIGRFAM cysS: cysteine--tRNA ligase 7 497 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vvi3g1048 513 Gene3D - 310 498 - -
Vvi3g1048 513 SUPERFAMILY Nucleotidylyl transferase 6 313 - -
Vvi3g1048 513 PANTHER CYSTEINYL-TRNA SYNTHETASE 9 501 IPR024909 -
Vvi3g1048 513 Gene3D HUPs 1 309 IPR014729 -
Vvi3g1048 513 Hamap Cysteine--tRNA ligase [cysS]. 7 498 IPR015803 GO:0004817|GO:0005524|GO:0006423
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1048 K01883 CARS, cysS; cysteinyl-tRNA synthetase [EC:6.1.1.16] - vvi:100854736 1018.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003707 3 1 1 2 3 2 1 2 2 0 2 2 1 1 2 1 2 2 1 2 1 2 1 1 1 2 1 1 1 1 45