Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1049 ATGGGGGAGAAGGGATTGGTTCCAAATACATATACTTACACCATTATTACTGCTGGGTTATGCAGAGCAAAGAGAATGAATGAGGCAAAATTGACATTTGAAGAGATGCAAAAGACTGGTTTGAAGCCTGACTATAATGCTTGCTCAGCTTTGATTGATGGGTTCATGAGGGAGGGTGATATAGATGAAGTTCTAAGAATTAAGGACGTGATGGTTTCTTGTGGTATTCCAATAAATCTTATCACTTATAATGTACTTATTCATGGTCTGTGTAAGTTTGGAAAGATGGAGAAGGCGGCTGAAATTTTGAAAGGGATGATTACATTGGGGTGCAAACCCAATTCCCGAACTTTTTGTTTACTGATTGAAGGGTATTGCCGGGAGCATAATATGGGTCGGGCATTAGAGCTTCTTGATGAGATGGAGAAGAGGAACTTAGTTCCTAGTGCAGTGAGCTATGGTGCAATGATTAATGGGTTATGCCATTGCAAAGATCTCTCACTGGCTAATAAGCTTCTGGAGAAAATGACTTTCAGTGGTTTGAAACCAAATGTTGTTGTCTATAGTACTCTCATCATGGGTTATGCCAGTGAAGGTAGGATTGAAGAGGCGAGAAGGCTTTTAGATGGAATGAGCTGTAGTGGAGTTGCACCTGACATATTTTGCTACAATGCTATCATATCTTGTCTCAGCAAGGCTGGAAAGATGGAAGAAGCAAGCACGTATTTATTGGAAATACAAGGGAGGGGACTGAAGCCAGATGCTGTCACTTTTGGGGCTTTCATCCTTGGGTACAGCAAGACAGGCAAAATGACAGAAGCAGCTAAGTATTTTGATGAGATGCTTGATCATGGTTTGATGCCAAACAATCCGCTTTACACTGTTCTAATTAATGGGCACTTCAAAGCAGGAAACTTAATGGAAGCATTATCAATATTTCGACACTTACATGCCCTGGGGGTGCTTCCTGATGTCCAAACTTGCAGTGCCTTTATCCATGGCCTCTTGAAGAATGGGAGGGTTCAAGAGGCACTTAAGGTATTCTCAGAACTTAAAGAGAAGGGTTTGGTCCCAGATGTGTTCACTTACAGCTCTCTCATCTCAGGGTTCTGTAAGCAAGGTGAGGTAGAGAAAGCTTTCGAACTTCATGATGAGATGTGTCTGAAAGGTATTGCTCCAAATATTTTTATTTACAATGCATTGGTTGATGGACTGTGCAAATCTGGTGATATCCAAAGAGCTAGAAAACTGTTTGATGGAATGCCAGAGAAGGGTTTAGAACCTGACAGTGTAACCTACTCCACAATGATTGATGGATACTGCAAATCTGAAAATGTAGCTGAGGCATTTAGTTTATTTCATGAAATGCCATCCAAGGGGGTTCAACCACATAGTTTTGTCTATAATGCTCTTGTCCATGGGTGTTGCAAAGAAGGAGACATGGAGAAGGCTATGAATCTGTTTCGTGAAATGTTGCAGAAGGGCTTTGCTACTACCCTCTCTTTCAACACTTTAATTGATGGATACTGCAAGTCATGCAAAATACAAGAAGCGAGCCAATTGTTTCAAGAAATGATAGCTAAGCAGATCATGCCTGACCATGTGACCTACACAACTGTCATTGACTGGCATTGCAAGGCAGGAAAGATGGAGGAAGCAAACCTTCTCTTTAAGGAGATGCAGGAAAGAAATCTGATTGTTGACACTGTCTTTGCATTGTTTGAGAAGATGGTGGCAAAGGGTGTCAAGCCAGATGAAGTCACTTATGGCCTAGTGATCTATGCTCATTGCAAAGAAGATAACTTGGTTGAGGCTTTTAAGTTGAGGGACGAGGTTGTGGGGAAAGGTATGCTGACTAAGGGAACTATTCACGATTTACTAATAACTGCTCTTTGCAAGAGAGAAGATCTTACTGAAGCCTCAAAGTTGCTTGATGAAATGGGAGAGCTAGGACTTAAGCCCAGTCTTGCTGCATGCAGTACTCTAGTCCGCAGTTTTCATGAAGCAGGCAAAATGGATGAAGCAACGCGGGTTTTTGAGGGTGTGAAGAGTTTAGGGTTGGTTCCTGACACCACTACTTTAATTGACTTAGTGAATGGAAATTTAAATGATACAGATTCTGAGGATGCCAGAAATCTTATAAAGCAATTAGTATGA 2157 41.4 MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV* 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17818133 17820344 + Vvi3g1049 Vvi3g1049 784724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1049 718 Pfam PPR repeat 580 611 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat 459 491 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat 4 37 IPR002885 -
Vvi3g1049 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 502 566 - -
Vvi3g1049 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 1 508 - -
Vvi3g1049 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 570 637 - -
Vvi3g1049 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 615 717 - -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 532 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Vvi3g1049 718 SUPERFAMILY HCP-like 265 497 - -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Vvi3g1049 718 Gene3D Tetratricopeptide repeat domain 623 718 IPR011990 GO:0005515
Vvi3g1049 718 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 655 689 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Vvi3g1049 718 Gene3D Tetratricopeptide repeat domain 199 304 IPR011990 GO:0005515
Vvi3g1049 718 Gene3D Tetratricopeptide repeat domain 305 409 IPR011990 GO:0005515
Vvi3g1049 718 Gene3D Tetratricopeptide repeat domain 410 496 IPR011990 GO:0005515
Vvi3g1049 718 Gene3D Tetratricopeptide repeat domain 567 622 IPR011990 GO:0005515
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Vvi3g1049 718 SUPERFAMILY TPR-like 465 561 IPR011990 GO:0005515
Vvi3g1049 718 Pfam PPR repeat 48 76 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat 293 320 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat family 393 442 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat family 79 127 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat family 148 196 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat family 499 542 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat family 218 262 IPR002885 -
Vvi3g1049 718 Pfam PPR repeat family 323 372 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Vvi3g1049 718 PANTHER OS07G0300200 PROTEIN 502 566 - -
Vvi3g1049 718 PANTHER OS07G0300200 PROTEIN 570 637 - -
Vvi3g1049 718 PANTHER OS07G0300200 PROTEIN 1 508 - -
Vvi3g1049 718 PANTHER OS07G0300200 PROTEIN 615 717 - -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Vvi3g1049 718 Gene3D Tetratricopeptide repeat domain 497 566 IPR011990 GO:0005515
Vvi3g1049 718 Gene3D Tetratricopeptide repeat domain 107 179 IPR011990 GO:0005515
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 47 79 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 535 568 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 625 655 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 117 149 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 361 395 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 431 463 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 293 325 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 467 496 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 11 44 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 151 185 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Vvi3g1049 718 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vvi3g1049 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Vvi3g1049 718 Pfam Pentatricopeptide repeat domain 642 690 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1049 - - K17964 vvi:100251738 1432.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1049 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .