Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1051 ATGGAAGAAGAAGCTCAAGGAAGCACAGAAGTTGCAGTGTTGAAGGTCGTCGAGAATATTGCCGTCGACACAGCTGATCCAATTAAGGTCACAAATGGGGATTTGCATCAGGAGGAAACCGCCCTGGATGGAGAGTTCATAAAAGTAGAGAAGGAATTGATCGATAATTGGCATCAACGGATTGTGGAAGTTGAGGAGAAACATGGCATTGAGTTGAAAAATCTACAGGATGCGTTGGAAGCCCACGAGGTGAAGCACAAGGAGCTCATCGGTGTGAAGGAAGCATTTGATAATCTCAGCCTTGAGCTTGAGAGCTCGATGAAGAAGATGGGGGAGCTAGAGAGCGAGCTGCAGGTGTCTGCAGGTGACGCTCGGAATAATGCAGCAAGAATGCAGGAGTTGTGTGATGATCTTGAGACAAAGCTGAAGCAGTCGGATGAAAATTTCTGCAAGACAGATTCTCTGCTATCTCAAGCTCTGGCAAACAATGCAGAGCTGGAGGAGAAACTCAAATCCCAAGAGGCGCTCCATCAAGAAACAGGTACAATTGCATCAACTGCTACTCAGAAGAAGGTTGAGGAAGAGAAGAAAGAGCTGAAGGGTCAAATGCAGGAATATGAGGATAAGATAACTCAGCTGGAGTCTGCCCTGAGTCAGTCATCATTGGAGAAATCTGAGCTTGGGTTGGAGTTGAAGAGCGTCGCAGCAAAATGCACTGAACATGAGGACCGAGCCAATTCAACCCACCAGCGAAGCCTTGAGCTTGAAGATTTGATGCAGTTGTCTCATTCCAAAAAATACTTGGAGCAGATATCTGACATTGAAGCAGAGCTTCAGATCTCCCGGGCTGAATCCAAAAGCCTGGAAAAAGCACTGGAATTGGCTAGTGAAACAGAGAGGGATATCACTGAACGATTGAATATTTCAATAGAAAAGCTCAAGTCTGCTGAGGAGCAATTGGAGCAACAAGGGAGAATAATCGAGCAAAGTACTGCTAGAAGCTTAGAGCTTGAAGAACTACACGAAACCCTAAAGAGGGATTCAGAGTTTAAACTAAATGAAGCGATTGCAAGCCTCAGCAGCAGGGATTCTGAGGCACAATCTCTGTACGAGAAACTGAAAAGTCATGAGGATCAAGTAAAGACTTATGAATTGCAGGTGGCTGACACAGCAGAAAAGTCCACCTCTCTGAAGGAAGAATTGGAGCGATGTTTGGGCGAACTGGCTGCTCTGCAAAGCACAAACGAGGAACTGAAAGTAAAGATCTCAGAAGCAGAAATCAAGGAAGCAGAGATCCAATTAGAAGAAGCTGTTCAGAGATTCACCCATAGAGATTCAGAGGCTAAAGAGTTGAATGAGAAGTTAACTGCACTTGAAAGCCAAATAAAAGTTTATGAAGAACAAGCTCATGAAGCATCTGCAATTTCTGAAACCCGAAAAGTAGACCTTGAACAGACTCTCCTGAAACTGAAAGATCTGGAAAGCGTTGTTGAGGAATTGCAAACAAAGTTGGGTCATTTTGAAAAAGAGAGTGAAGGACTCGCTGAGGCTAATTTGAAGCTTACTCAGGAACTGGCTGCATATGAATCCAAAATGAACGATTTACAAGAAAAACTTTTAACAGCATTTTCTGAGAAGGACGAAACAGTTGAACAGCTCCAATTTTCAAAGAAAGGAATTGAAGATTTGAGACAGCAGCTTGCTACTGAAGGGCAGAAACTACAATCACAGGTATCTTCAGTAATGGAAGAGAACAACCTACTCAATGAAACCTATCAAGCTGCCAAGAATGAACTTCAGGCTGTGATAATCCAGCTTGAAGGACAACTGAAAGAACAGAAAGCAAATGAAGACGCTATAAAAGCTGAGATGGAAAACCTCAAAGCCGAAATTGCAGACAAATCTGTGTTGCAAACTCGTCTGGATGAGCTTGAAAAACAATTGGTCTTAGCTGAGGCTCGACTGAAAGAAGAGGTTGAAACTGTCCAGGCAGCTGCAGCTGGAAGGGAGGCCGAATTAAATATACAATTGGAGGATCATGTGCGTAAAGTTCATGACAGGGACATATTAAGTGGACAAGTGGTACAACTTCAGGAAGAACTGCATCTTGCCCACACCTCAATTGCAGAAAAAACTGTCTTGCAAACTCGTTTGGAGGAGCTTGAGAAACAATTAGTGATAGCTGAGGCTCAATTGAAAGAAGAGGTTGAAAGCGTTCGGGCAGCTGCTGTTGGAAGAGAGGCAGAATTAAGTACTCAATTGGAGGAGCACGCACGTAAAGTTCAAGATAGAGACTCCTTAAGTGAACAAGTAGTACAACTTCAAAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAGAAGGAAACTCATTCTCAAAAAGAGTTGGAACGTGAGGCAGCAGCAAAGCATTTGCTTGAGGAGCTTGAAGCTAAGAAACAAGAACTCATACTTAAAGAGAACCAGGTTAAGGAACTAGAGCAGAAATTGCAGCTGGCTGAGGCTAAATCAAAAGAAAAGGCTGATGGAGGCAGTCCATCTGAGGGTATGGAGGTAAAATCCAGAGACATTGGGTTAGTTACCTCAACTCCATCAAGAAGGAAGAGCAAGAAAAAGTCAGAAGGAACTTCACCTCAAACCTCATCATCTTCAGAGATCCATGCTCGGGCCAATGAGGTTTCTTCTGCCATGACCCTTAAGTTTATCCTGGGTGTAGCCCTGGTGTCCGTGATCGTTGGCATAATTCTTGGAAAGCGATATTAG 2766 43.67 MEEEAQGSTEVAVLKVVENIAVDTADPIKVTNGDLHQEETALDGEFIKVEKELIDNWHQRIVEVEEKHGIELKNLQDALEAHEVKHKELIGVKEAFDNLSLELESSMKKMGELESELQVSAGDARNNAARMQELCDDLETKLKQSDENFCKTDSLLSQALANNAELEEKLKSQEALHQETGTIASTATQKKVEEEKKELKGQMQEYEDKITQLESALSQSSLEKSELGLELKSVAAKCTEHEDRANSTHQRSLELEDLMQLSHSKKYLEQISDIEAELQISRAESKSLEKALELASETERDITERLNISIEKLKSAEEQLEQQGRIIEQSTARSLELEELHETLKRDSEFKLNEAIASLSSRDSEAQSLYEKLKSHEDQVKTYELQVADTAEKSTSLKEELERCLGELAALQSTNEELKVKISEAEIKEAEIQLEEAVQRFTHRDSEAKELNEKLTALESQIKVYEEQAHEASAISETRKVDLEQTLLKLKDLESVVEELQTKLGHFEKESEGLAEANLKLTQELAAYESKMNDLQEKLLTAFSEKDETVEQLQFSKKGIEDLRQQLATEGQKLQSQVSSVMEENNLLNETYQAAKNELQAVIIQLEGQLKEQKANEDAIKAEMENLKAEIADKSVLQTRLDELEKQLVLAEARLKEEVETVQAAAAGREAELNIQLEDHVRKVHDRDILSGQVVQLQEELHLAHTSIAEKTVLQTRLEELEKQLVIAEAQLKEEVESVRAAAVGREAELSTQLEEHARKVQDRDSLSEQVVQLQKELHLAQTSIVEQKETHSQKELEREAAAKHLLEELEAKKQELILKENQVKELEQKLQLAEAKSKEKADGGSPSEGMEVKSRDIGLVTSTPSRRKSKKKSEGTSPQTSSSSEIHARANEVSSAMTLKFILGVALVSVIVGIILGKRY* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17828185 17835444 - Vvi3g1051 Vvi3g1051 784726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1051 921 Coils Coil 366 393 - -
Vvi3g1051 921 Coils Coil 800 844 - -
Vvi3g1051 921 Coils Coil 121 148 - -
Vvi3g1051 921 Coils Coil 578 661 - -
Vvi3g1051 921 Coils Coil 72 92 - -
Vvi3g1051 921 Coils Coil 96 116 - -
Vvi3g1051 921 Coils Coil 401 440 - -
Vvi3g1051 921 PANTHER EARLY ENDOSOME ANTIGEN 190 426 - -
Vvi3g1051 921 PANTHER EARLY ENDOSOME ANTIGEN 708 921 - -
Vvi3g1051 921 PANTHER EARLY ENDOSOME ANTIGEN 57 125 - -
Vvi3g1051 921 PANTHER EARLY ENDOSOME ANTIGEN 1 55 - -
Vvi3g1051 921 PANTHER EARLY ENDOSOME ANTIGEN 424 711 - -
Vvi3g1051 921 PANTHER EARLY ENDOSOME ANTIGEN 121 195 - -
Vvi3g1051 921 Coils Coil 189 223 - -
Vvi3g1051 921 MobiDBLite consensus disorder prediction 835 888 - -
Vvi3g1051 921 Coils Coil 47 67 - -
Vvi3g1051 921 Coils Coil 448 475 - -
Vvi3g1051 921 Coils Coil 156 176 - -
Vvi3g1051 921 Coils Coil 704 738 - -
Vvi3g1051 921 Coils Coil 264 291 - -
Vvi3g1051 921 Coils Coil 483 545 - -
Vvi3g1051 921 Coils Coil 303 347 - -
Vvi3g1051 921 Coils Coil 757 784 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1051 - - K20283 vvi:100256869 916.376
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1051 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00528 . . . . Cpe14g00411 Cpe01g00555 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007249 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 3 1 37