Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1052 ATGGCTGGTGGGTTGTTGTGGGCAACAAGGGCCGCTTCATATTTGAGGATCTCAGTGCCCTTCAGAGCCTTTTCTTCTGTTGTTAAGGATTTGAAATATGTTGATTCTCATGAGTGGGCCAAAGTTGACGGAAATTTAGCAACCATAGGGATTACCGACCATGCTCAGGATCATTTAGGTGATGTTGTGTATGTGGAACTGCCTGAAGTTGGAGCCAATGTTTCACAGGGTGGCAGTTTTGGTGCTGTTGAGAGTGTCAAAGCAACCAGCGACATCAACTCCCCTGTTTCGGGCAAAGTGGTTGAAGTCAATGAAGAACTCAGCAGCTCTCCAGGTTTGGTTAACGGGAGCCCGTACGAGAAAGGGTGGATCATAAAGGTAGAGATCAGCAACCCAAGTGAGCTCAACTCCTTGATGGACTCAGAGCAGTACTCCAAGTTCTGTGAAGAAGAAGATGCAAAGCATTGA 468 47.01 MAGGLLWATRAASYLRISVPFRAFSSVVKDLKYVDSHEWAKVDGNLATIGITDHAQDHLGDVVYVELPEVGANVSQGGSFGAVESVKATSDINSPVSGKVVEVNEELSSSPGLVNGSPYEKGWIIKVEISNPSELNSLMDSEQYSKFCEEEDAKH* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17875980 17882649 + Vvi3g1052 Vvi3g1052 784727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1052 155 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 5 153 IPR002930 GO:0005960|GO:0019464
Vvi3g1052 155 ProSiteProfiles Biotinyl/lipoyl domain profile. 46 128 IPR000089 -
Vvi3g1052 155 SUPERFAMILY Single hybrid motif 27 150 IPR011053 -
Vvi3g1052 155 Pfam Glycine cleavage H-protein 31 150 IPR033753 -
Vvi3g1052 155 Hamap Glycine cleavage system H protein [gcvH]. 28 149 IPR002930 GO:0005960|GO:0019464
Vvi3g1052 155 TIGRFAM gcvH: glycine cleavage system H protein 28 152 IPR017453 GO:0005960|GO:0019464
Vvi3g1052 155 CDD GCS_H 33 127 IPR033753 -
Vvi3g1052 155 Gene3D - 20 151 - -
Vvi3g1052 155 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 5 153 - -
Vvi3g1052 155 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 71 100 IPR003016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1052 K02437 gcvH, GCSH; glycine cleavage system H protein - vvi:100265691 311.227
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1052 . . . . . . . . . . . . . . . . Cpe15g00350 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001731 4 1 2 1 2 2 2 2 2 2 2 2 3 2 2 3 2 6 2 2 2 2 2 2 2 2 2 4 2 3 69