Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1056 ATGCAAAACAAAAAAAAAATTGTTTTTTTTTTTTTTTTTTTTTTTGGGTCCCTGTCCACGCTTAGCCTCGCAGACTTTCTGGAACCGGCCACAGCCATAACCATGGCTGCTACTTTGCTTTCACCTCACCTTCTCTTAAACCCTAAACTATCCATACAAACCTCTGCTTCTAAATTCCCAACACCCAAATCCCGCTCAACCCCCAAAATTAGGGCAACCTTCTCCGACCCATTTGTCCCCCAGATTGCAGAAAGCCTAGAGGACTCTCTCTCTTCTTCTTCAACCTCTTCTCCACCACCTCTCCAAAAGCTCAGAGACGCCTCCTCACAAACCGGGACCTGTTTTGGTCCCTCAATGGGTTGGGCACACTGGACATGGTTGTTGTGTATGTTCCGGCTGGGTGTCGCGTGGAAATGCCCCTTCATATCGTGTATTAGTCCGTTGAGGGTGGGGATATCGGGTTTAAGAAGTTACCTGTGTCAAATCCAAGGGTTTTTGTGTTGGTGGAGGAGGGAGGGGAAATTGGTGAGATCGAGGAGTTTGTGGGTGGAGGTGAGAACAAGTGTTATTGGGCTAATGCAGTTACTGAGCAAAAACATGAGAATGGCTTCACTTAGACTGCCTGATTCAATTCCTTCTCCAGCCCAAGATAGTGAGAGACTTAATCTAGCTTTACAAGGGAGAGGAGTGGATGAACAAGTGATAGTATGGATATTGGGACACAGGAATGCAATCCAAAGGAAGCAGATCAAAGACACTTACCAACAGCTTTATAAAGAGTCCATCATCCATCGTCTTCAATCTAAACTATCTAGTGGGCTCAAGACAGCAATGATCTTGTGGATGAATGAAGCCCCCGAAAGGGATGCGATATTGGCAAACAAGGCCTTGAAAAGGAAGAGGAAGAAAATAAATCAGTTGCAGGTATTGGTAGAGATAGCATGTGCATCATCCCCGGACCATCTAATGGCAGTGAGGCAGGCCTACTGCTCTTTATACGAATGCTCTCTGGAAGAAGACATCACATCCAACATCTCAACTTCTCTCCAAAAGCTTCTAGTGGGTCTAGTGAGCTCGTACAGGCATGATAGAGAATTGGTGGACTTTAATCTTGCAAAATCTGAGGCAGATAAGATACATGAAGCCATTGAAAAGAATCAATTAGATCATGATGATGTTGTGTGGATATTGACAACAAGGAATTTCTTTCAACTTAGAGCAACTTTTGTGTGCTACAAGCAAAGTTACGAAGTTGCTATTGATCAGGCCATTAATAGCAGTGGAAATGGTGATTTGGGCTCTATATTGCGAGGAGTAATTTTGTGCATTGTTTCCCCAGAGAAACATTTTGCTGAGGTCATTAAAGCCTCCACTGTTGGGTACTGGACTAAAGATGAAGATTCATTGACAAGAGCAATTGTGACTCGGGCTGAAATTGATATGACGAAGATCAAAGGAGAGTACTTCAAAATGAACAACACCAATCTCGATGATGTAGTTAGACGTGATACATCAGGGGTTTACAAAAGCTTCTTGATGGCCTTAATTGGAGCAAAAATTTGA 1563 43.38 MQNKKKIVFFFFFFFGSLSTLSLADFLEPATAITMAATLLSPHLLLNPKLSIQTSASKFPTPKSRSTPKIRATFSDPFVPQIAESLEDSLSSSSTSSPPPLQKLRDASSQTGTCFGPSMGWAHWTWLLCMFRLGVAWKCPFISCISPLRVGISGLRSYLCQIQGFLCWWRREGKLVRSRSLWVEVRTSVIGLMQLLSKNMRMASLRLPDSIPSPAQDSERLNLALQGRGVDEQVIVWILGHRNAIQRKQIKDTYQQLYKESIIHRLQSKLSSGLKTAMILWMNEAPERDAILANKALKRKRKKINQLQVLVEIACASSPDHLMAVRQAYCSLYECSLEEDITSNISTSLQKLLVGLVSSYRHDRELVDFNLAKSEADKIHEAIEKNQLDHDDVVWILTTRNFFQLRATFVCYKQSYEVAIDQAINSSGNGDLGSILRGVILCIVSPEKHFAEVIKASTVGYWTKDEDSLTRAIVTRAEIDMTKIKGEYFKMNNTNLDDVVRRDTSGVYKSFLMALIGAKI* 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17907033 17917706 - Vvi3g1056 Vvi3g1056 784731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1056 520 MobiDBLite consensus disorder prediction 89 108 - -
Vvi3g1056 520 ProSiteProfiles Annexin repeat profile. 212 283 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 Pfam Annexin 450 515 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 Pfam Annexin 216 279 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 Pfam Annexin 294 356 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 Pfam Annexin 375 436 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 PRINTS Annexin family signature 459 479 IPR001464 GO:0005509|GO:0005544
Vvi3g1056 520 PRINTS Annexin family signature 503 516 IPR001464 GO:0005509|GO:0005544
Vvi3g1056 520 PRINTS Annexin family signature 266 282 IPR001464 GO:0005509|GO:0005544
Vvi3g1056 520 PRINTS Annexin family signature 226 248 IPR001464 GO:0005509|GO:0005544
Vvi3g1056 520 ProSiteProfiles Annexin repeat profile. 284 358 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 PANTHER ANNEXIN 208 520 - -
Vvi3g1056 520 Gene3D Annexin 445 518 IPR037104 GO:0005509|GO:0005544
Vvi3g1056 520 SUPERFAMILY Annexin 203 517 IPR037104 GO:0005509|GO:0005544
Vvi3g1056 520 SMART annex3 308 356 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 SMART annex3 463 515 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 SMART annex3 229 281 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 SMART annex3 389 439 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 Gene3D Annexin 369 444 IPR037104 GO:0005509|GO:0005544
Vvi3g1056 520 ProSiteProfiles Annexin repeat profile. 445 517 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 Gene3D Annexin 196 283 IPR037104 GO:0005509|GO:0005544
Vvi3g1056 520 Gene3D Annexin 284 357 IPR037104 GO:0005509|GO:0005544
Vvi3g1056 520 ProSiteProfiles Annexin repeat profile. 370 441 IPR018502 GO:0005509|GO:0005544
Vvi3g1056 520 PRINTS Plant annexin signature 323 337 IPR009118 -
Vvi3g1056 520 PRINTS Plant annexin signature 365 385 IPR009118 -
Vvi3g1056 520 PRINTS Plant annexin signature 430 448 IPR009118 -
Vvi3g1056 520 PANTHER ANNEXIN D3 208 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1056 K17098 ANNAT; annexin D - vvi:100243369 622.854
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g1056 Vvi18g400 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00768 Csa07g00545 . Cme01g00246 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01506 Cam09g1655 Cec09g1662 Cco09g1712 . . Cre09g1546 . . Chy01g00259 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021135 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1