Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1057 ATGATTTTTAGAAACCTCGTTAGATCCACTCTCAGGAACACTCAGGCTGTTTCATACAAAAATCATGTTGCGGCTGCTAGAAGTTTGCAGGAGCATCTGGTTCGGGCTCCCGTGCTGGCCAGATGGAACAGCACAGAGGCATCCATGCAAAGGGAAGATGCAGAAACCGAGTTGAAGAATGCTAAAGAGTTCAAGGGCCATGATATGTTGGCACCTTTCACAGCCGGGTGGCAGGCTTCTGATACAAATCCTCTAGTAATAGAGAAGTCTAAGGGTGCCTATGTCTGGGACATCAATGGAAAGAAGTATCTCGATTCTCTGGCTGGTCTATGGTGCACAGCTTTAGGGGGGAGTGAACCTCGACTTGTTGCTGCTGCAATTGCTCAACTAAATACCTTGCCGTTTTACCACTCCTTTTGGAATCGTACTACAAAACCCTCTCTGGATCTTGCAAAGGAACTTCTAAACACTTTTACAGCAACAAAAATGGGAAAAGCATTTTTTACAAATAGTGGATCAGAAGCCAATGATACCCAGGTGAAGTTGGTATGGTATTATAATAATGCACTTGGAAGACCAAATAAGAAGAAATTCATAGCTCGGGAAAAATCGTACCATGGATCAACCCTAATATCAGCTAGTCTTTCAGGACTTCCAGCATTGCATCAAAAATTTGATCTGCCTGCTCCATTTGTACTACACACTGATTGTCCTCATTACTGGCGCTATCATCTTCCAGGTGAGTCAGAAGAGGAGTTCTCAACCAGATTAGCCAATAATTTAGAGAATCTTATCCTGAAAGAGGGACCAGAGACGATTGCCGCATTCATTGCAGAGCCTGTCATGGGAGCAGGAGGTGTGATTCCTCCACCTGCAACTTATTTTGATAAGATCCAACCTATCTTGAAAAAATATGATATTCTCTTTATTGCGGATGAGGTAATTTGTGCATTTGGAAGGCTTGGAACAATGTTTGGATGTGACAAATATGGCATGAAACCAGACCTTGTCTCCATGGCAAAGGCTCTGTCTTCTGCATATATGCCAATTGGAGCCGTTCTTGTGAGCCCTGAAATTTCAGATGTTATAGACTCTCAAAGCAACAAACTTGGTGTTTTTTCTCATGGATTTACCTATTCCGGGCACCCTGTCTCCTGTGCAGTTGCATTGGAAGCCCTCAAAATCTACAAGGAAAGAAACATTGCTGAGGTAGTACAGAGAATTTCCCCAAAGTTTCAAAATGGGCTAAAAGCCTTCTCCGACAGTCCCATTATTGGAGAGATACGAGGAACTGGCTTGATTCTCGGTACTGAGTTCACAGACAATAAGTCACCTAATGATGTGTTCCCTCCTGAATGGGGCAATCTATTACCCAATAGCATAGGTGCATATTTTGGAGCACAGTGCCAGAAGCATGGGATGCTAGTACGTGTTGCAGGGGATAGCATCATGATGTCTCCCCCATTTATAATCACCCCTGAAGAAGTTGACGAGTTAATCAGCATATATGGGAAAGCACTGAAGGCTACTGAAGAGAGGGTGAAGGAGCTCAAGTCCCTGCAGAAGTAA 1569 43.72 MIFRNLVRSTLRNTQAVSYKNHVAAARSLQEHLVRAPVLARWNSTEASMQREDAETELKNAKEFKGHDMLAPFTAGWQASDTNPLVIEKSKGAYVWDINGKKYLDSLAGLWCTALGGSEPRLVAAAIAQLNTLPFYHSFWNRTTKPSLDLAKELLNTFTATKMGKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAREKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGESEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQPILKKYDILFIADEVICAFGRLGTMFGCDKYGMKPDLVSMAKALSSAYMPIGAVLVSPEISDVIDSQSNKLGVFSHGFTYSGHPVSCAVALEALKIYKERNIAEVVQRISPKFQNGLKAFSDSPIIGEIRGTGLILGTEFTDNKSPNDVFPPEWGNLLPNSIGAYFGAQCQKHGMLVRVAGDSIMMSPPFIITPEEVDELISIYGKALKATEERVKELKSLQK* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17918850 17928072 - Vvi3g1057 Vvi3g1057 784732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1057 522 Gene3D Aspartate Aminotransferase, domain 1 85 507 IPR015422 GO:0003824
Vvi3g1057 522 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 6 517 - -
Vvi3g1057 522 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 6 517 - -
Vvi3g1057 522 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 309 346 IPR005814 GO:0008483|GO:0030170
Vvi3g1057 522 Pfam Aminotransferase class-III 82 506 IPR005814 GO:0008483|GO:0030170
Vvi3g1057 522 SUPERFAMILY PLP-dependent transferases 77 508 IPR015424 -
Vvi3g1057 522 Gene3D - 119 401 IPR015421 GO:0003824
Vvi3g1057 522 CDD OAT_like 84 507 IPR005814 GO:0008483|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1057 K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] - vvi:100248495 1034.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00659 Cmo16g00534 . . . . . Cpe01g00553 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000985 1 3 1 1 1 2 1 4 1 3 2 3 3 5 5 6 3 3 4 3 3 2 2 2 3 4 2 3 3 2 81