Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1058 ATGGTGAGGAAACATGGATGGCAACTACCAGCCCATACTTTCCAGGTTGTTGCAATCACTGTATTCTGCTTGTTAGTCGTTGCCTTCTATGCTTTCTTTGCCCCTTTTGTTGGAGGCCGCATCTGGGAGTACGCATTGATCGGCACTTACTCTCCGGTGGCACTCCTTGTTTTCATTCTTTATGTTCGGTGCACTGCAATCAACCCGGCAGATCCTGGCATTTTGTCCAAATTTGATAATCAAGCAATTGATAAACCCAACTCAAAGCATGGATTATCAGCCAAGGACTTGCCCACAAAATTTGATGAAATTGGGAATGGGCCACAGAAATCATCTTGTTGTAATTTTGGAGGAATTTTCTGCGCATTGTTTGTACATAAAGATTGCCGCAAACAAGAAGGTACAGCTGAGCAACAGGGCGCAGGTGAAGATGCTTTATTCTGCACATTGTGCAATGCTGAGGTACGCAAATTCAGCAAACACTGTAGAAGTTGTGACAAATGTGTGGATGGATTTGATCACCATTGTCGGTGGCTTAACAATTGTGTGGGGAGGAAAAATTATGTAACTTTTATCTCCCTTATGGCCATCAGTCTCATTTGGCTTGTTATCGAAGTTGGAGTTGGTATTGCTGTCCTAGTGCGTTGCTTTGTTAATAAGAAAGGCATGGAGACTGAAATCATTGATAGACTTGGAAATGGTTTCTCCCGTGCTCCATTTGCAACTGTTGTGGTCATATGTTCTGCAGTTTCATTGCTGGCTTGTGTACCTTTGGGTGAACTTTTCTTTTTCCACATAATACTGATTAGAAAGGGTATTACAACGTATGAGTATGTTGTGGCGATGAGGGCCATGAGTGAGGCACCAGCAGGAGCATCTGTTGATGAAGAATTGCCGAATGTGCTATACTCACCATCAGGATCAGCGACAACTGGCTTGAGTGGTGGAAGTTCCCTGGGACTGCAATACAAGGGGGCATGGTGTACCCCTCCGAGAGTCTTTGTTGATTATCAGGATGAAGTTATACCTCACTTGGATCCTGGAATGGTCCCATCTACTGTGGATCCAGATGCAGCTGGATTTGCAGAAAGAGGGAACAAGGTTCCTAAAAGGCCAGTCCGGATCAGTGCTTGGAGGCTTGCAAAGTTAGATTCAAATGAGGCCGTGAGAGCAGCAGCCAAAGCGAGGGCATCCTCTTCCGTTCTCCGGCCAGTTGACAACCGCCATGTAGCAGATCCTGAATTGAGTTCCAGTGGGAACATAAGTGTCACAAGCAGTTTGAGCACAGACATGGGGGCAAATAAGGAACTCAAGAATGATCTGAGACTTTCTCCCATCAGAAACTCTCTTGCTCCTAGTCAAGGTAGTCGGGATGAATATGAGACTGGGACTCAAAGTGTTAGTAGCTTCAGCAGTCCTAGCCATGTTCATGAATCGGTCACACTAAGCCCTCTCCCACAAGCTCATGCAGTATTTCCTAATATCAGCCACCAGTCGACCCATCCTTCTACTGGATTTGAAGAAAAAATCATCCAAAAAGGAGGCAGTACTGATCCCTTATTGCTTTCTGCTCCAGCTGCTTCTCTACTTAGAGATGTGAAAAGGACATCAGTGGTGTGGGACCAAGAAGCCGGAAGATATGTATCAGTCCCTGTATCAGCTTCAGAAGCTCGAAACAGATCAACCATACAAATAGGAATATCAAACCCTACCACAGAAATGGGTGGCTATGGTAGAAGACCTGTTGTTCCACCTCAAGAATCTACATCATCTGCGTTAAAGGCTCCAGCTCAGCAATCTGAGAAGCTGATGTATACAGGAGAGTCTATCTTCTTTGGTGGCCCGCGGTTGATTGTCCCGGTTAGGGATGGTTTGAGAAATGAGAGGGGTTCAGGGCCAAGAGAGGGCCAAGAGAGGGTGGCACTGAACTTGCCCAGGGAGTCAAGATTCAAGAGGGATTCAGCCTCAAACCAGCTTCCTGTGTTCATCCCTGGGGGTTTCGAGCAGAAGCCTCCATCTGGGTTGGGTTTAAAGTAG 2037 46.15 MVRKHGWQLPAHTFQVVAITVFCLLVVAFYAFFAPFVGGRIWEYALIGTYSPVALLVFILYVRCTAINPADPGILSKFDNQAIDKPNSKHGLSAKDLPTKFDEIGNGPQKSSCCNFGGIFCALFVHKDCRKQEGTAEQQGAGEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYVTFISLMAISLIWLVIEVGVGIAVLVRCFVNKKGMETEIIDRLGNGFSRAPFATVVVICSAVSLLACVPLGELFFFHIILIRKGITTYEYVVAMRAMSEAPAGASVDEELPNVLYSPSGSATTGLSGGSSLGLQYKGAWCTPPRVFVDYQDEVIPHLDPGMVPSTVDPDAAGFAERGNKVPKRPVRISAWRLAKLDSNEAVRAAAKARASSSVLRPVDNRHVADPELSSSGNISVTSSLSTDMGANKELKNDLRLSPIRNSLAPSQGSRDEYETGTQSVSSFSSPSHVHESVTLSPLPQAHAVFPNISHQSTHPSTGFEEKIIQKGGSTDPLLLSAPAASLLRDVKRTSVVWDQEAGRYVSVPVSASEARNRSTIQIGISNPTTEMGGYGRRPVVPPQESTSSALKAPAQQSEKLMYTGESIFFGGPRLIVPVRDGLRNERGSGPREGQERVALNLPRESRFKRDSASNQLPVFIPGGFEQKPPSGLGLK* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17935112 17947035 - Vvi3g1058 Vvi3g1058 784733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1058 678 PANTHER PROTEIN S-ACYLTRANSFERASE 19-RELATED 9 90 - -
Vvi3g1058 678 PANTHER PROTEIN S-ACYLTRANSFERASE 19-RELATED 105 476 - -
Vvi3g1058 678 Pfam DHHC palmitoyltransferase 145 280 IPR001594 GO:0016409
Vvi3g1058 678 MobiDBLite consensus disorder prediction 627 653 - -
Vvi3g1058 678 MobiDBLite consensus disorder prediction 413 433 - -
Vvi3g1058 678 ProSiteProfiles DHHC domain profile. 146 196 - -
Vvi3g1058 678 MobiDBLite consensus disorder prediction 446 480 - -
Vvi3g1058 678 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 105 476 - -
Vvi3g1058 678 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 9 90 - -
Vvi3g1058 678 MobiDBLite consensus disorder prediction 624 678 - -
Vvi3g1058 678 MobiDBLite consensus disorder prediction 396 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1058 K20027 ZDHHC1_11; palmitoyltransferase ZDHHC1/11 [EC:2.3.1.225] - vvi:100253600 1285.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g1058 Vvi18g352 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00658 Cmo16g00535 . . . . Cpe14g00415 Cpe01g00552 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005383 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40