Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1060 ATGAACAAGGACAAAATATTTAAGCTAGCAAAAGGATTCAGGGGGAGGGCGAAGAACTGCATAAGGATAGCGAGAGAGAGGGTGGAGAAGGCATTGCAGTATTCTTACAGAGATCGAAGAACCAAAAAAAGGGACATGCGCTCTCTTTGGATCGAAAGGATTAATGCTGGCTCCCGCCTGCACGGAGTTAATTACAATAACTTTATACATGGGTTGATGAAGGAGAACATCCAGCTGAACAGGAAAGTTCTCTCAGAGCTGTCTATGCATGAACCTTACACCTTCAAAGCCCTGGTGGATATCTCACAGAATGCCTTCCCTGGAAATAAGAAAGCGGTGCTTCCTCCCAGAAAGGAAGGCATTTCAGTTGTTCTGTAA 378 44.71 MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIERINAGSRLHGVNYNNFIHGLMKENIQLNRKVLSELSMHEPYTFKALVDISQNAFPGNKKAVLPPRKEGISVVL* 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17971905 17975776 - Vvi3g1060 Vvi3g1060 784735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1060 125 Coils Coil 125 125 - -
Vvi3g1060 125 Gene3D - 1 44 - -
Vvi3g1060 125 PRINTS Ribosomal protein L20 signature 1 30 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1060 125 PRINTS Ribosomal protein L20 signature 31 60 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1060 125 PRINTS Ribosomal protein L20 signature 64 90 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1060 125 PANTHER 50S RIBOSOMAL PROTEIN L20 1 124 - -
Vvi3g1060 125 Gene3D Ribosomal protein L20 45 106 IPR035566 -
Vvi3g1060 125 PANTHER 39S RIBOSOMAL PROTEIN L20 1 124 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1060 125 SUPERFAMILY Ribosomal protein L20 2 105 IPR035566 -
Vvi3g1060 125 TIGRFAM rplT_bact: ribosomal protein bL20 3 101 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1060 125 Hamap 50S ribosomal protein L20 [rplT]. 1 104 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1060 125 Pfam Ribosomal protein L20 3 98 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1060 125 CDD Ribosomal_L20 5 100 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1060 K02887 RP-L20, MRPL20, rplT; large subunit ribosomal protein L20 - vvi:100263906 252.677
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1060 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006373 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38