Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1061 ATGTATGTTGAAATGTCTAGACAATGTGGTGGGTATCGAGATGTTGGGTTTCTTAGGAATGAAATACCTTCTCAGTTTGATAAAGGGCGGTACCTGGCTCTAGATGAGGGGGATGCCCAAGTCATACTTGAGTATTTTAAGCACATCCAGAAGGATAATCCTAACTTCTTCTATGCATTAGACCTGAATGAAGAGCAGCGCCTAAGAAATTTGTTTTGGGTTGATGCCAAAAGTAGGAATGACTACATCCATTTCAGTGATGTTGTATCATTTGATACTACTTATGTAAAAAGCAACGATAAAATGCCATTTGCGCTTTTTATTGGGGCAAACCATCACTTCCAATCCATGTTGCTTGGATGTGCGTTGATTGCGGATGAGACCAAACCAACATTCGTTTGGTTAATGAAAACTTGGCTTAGAGCAATGGGTGGGCAGGCTCCTAAAGTGATAATAACTGATCAAGACAGAACTTTGAAGGCAGCTACTGAAGAAGTCTTTCCAAATGCACGTCATTGCTTTGCTCTTTGGCATGTATTGGAAAAAATCCCTGAAGTTCTCACTCCTGTAATCAAACGACATGAAAATTTTATGGCAAAATTCAACAAGTGCATTTTTAAGTCATGGACAGATGAACAGTTTGATATGAGATGGTGGAAAATGGTCAGTAGGTTTGAACTTCAAGAGGATGGATGGTTTCAGTTTTTATATGAAGATCGTAAAAAGTGGGTACCAACTTTTATGGGGGATACTTTTTTGGCAGGCATGTCTACAGCTCAGCGCTCTGAAAGTATAAACTCTTTCTTCGACAAATACATTCATAAGAAAATTACCCTGAAAGAGTTTGTGAAGCAGTATGGATTAATTCTACAAAATAGGTATGAAGAGGAAGCAATAGCAGATTTCGATACATGGCACAAACAGCCTGCATTGAAATCTCCTTCACCCTGGGAAAAACAGATGTCAACTGTTTACACACATGCAATATTCAAGAAATTCCAAGTTGAGGTTTTGGGTGTAGTTGGGTGCCATCCCAGCAGAGAAATTGAAGATGGAGCGAATATGACATTTAGAGTTGTGGACTGTGAAAAGAACGAAACTTTTATGGTGTCATGGAAAGAAGTGAAGGCAGAGGTTTCTTGTTTATGTCGTTCTTTTGAATACAAAGGCTTTCTTTGTAGACATGCAATGATTGTTCTCCAAATTTGTGGCCTTTCTAGTATCCCAACTCAGTATATTCTAAAGAGGTGGACAAAAGATGCAAAGAACCAGCCATCAACAGTTGAAGGAACGGAACGCATACAAACTAGGGTGCAACGTTACAATGATTTATGTAAACGAGCCATTGAGTTGGGTGAAGAAGGATCTTTGTCTCAAGAGAGCTACAGTATTGCATTCCGAACGCTGGTAGAAGCCCTGAAAAATTGTGTGAATGTGAATAATTCAAATAAAAGTGCTGTAGAATTTATCAGCAATGCTCATGGTCCTCGTGACATGGAAGAAGAGAATCAGGGAAGCCTTGGAACCAAAACAAGTAAGAAGAAGATGGCAAGCAGGAAAAGGAAGGGACAATCAGAGCCTGGTGTTATAATTCCTGAGGCACAAGATAGCTTGCAGCAAATGGGAAATCTAAGCTCAGATGGAATAACTCTTAATGGCTTTTATGGATCCCAACAGAATGTGCAAGGACTGGTGCAATTGAACTTAATGGAGCCTCCTCATGATGGTTACTATGTTAATCAGCAGGGCATGCAGGGGCTGGGACAACTAAATGCAGTAGCACCCAATCATGACGGGTTCTTTGGGACTCAACCAAGCATGCATGGCCTGGGGCATCTGGATTTTCGACCACCAACTAGCTTTGGTTACAGCATGCAGGATGAGCACAGCCTGAGATCCACACAGTTGCATGGAGATGCTTCAAGACATGCATGA 1935 40.88 MYVEMSRQCGGYRDVGFLRNEIPSQFDKGRYLALDEGDAQVILEYFKHIQKDNPNFFYALDLNEEQRLRNLFWVDAKSRNDYIHFSDVVSFDTTYVKSNDKMPFALFIGANHHFQSMLLGCALIADETKPTFVWLMKTWLRAMGGQAPKVIITDQDRTLKAATEEVFPNARHCFALWHVLEKIPEVLTPVIKRHENFMAKFNKCIFKSWTDEQFDMRWWKMVSRFELQEDGWFQFLYEDRKKWVPTFMGDTFLAGMSTAQRSESINSFFDKYIHKKITLKEFVKQYGLILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVVGCHPSREIEDGANMTFRVVDCEKNETFMVSWKEVKAEVSCLCRSFEYKGFLCRHAMIVLQICGLSSIPTQYILKRWTKDAKNQPSTVEGTERIQTRVQRYNDLCKRAIELGEEGSLSQESYSIAFRTLVEALKNCVNVNNSNKSAVEFISNAHGPRDMEEENQGSLGTKTSKKKMASRKRKGQSEPGVIIPEAQDSLQQMGNLSSDGITLNGFYGSQQNVQGLVQLNLMEPPHDGYYVNQQGMQGLGQLNAVAPNHDGFFGTQPSMHGLGHLDFRPPTSFGYSMQDEHSLRSTQLHGDASRHA* 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17992263 17995838 - Vvi3g1061 Vvi3g1061 784736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1061 644 Pfam MULE transposase domain 88 181 IPR018289 -
Vvi3g1061 644 Pfam SWIM zinc finger 376 401 IPR007527 GO:0008270
Vvi3g1061 644 MobiDBLite consensus disorder prediction 624 644 - -
Vvi3g1061 644 SMART 26again6 379 406 IPR006564 GO:0008270
Vvi3g1061 644 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 559 IPR031052 GO:0006355
Vvi3g1061 644 MobiDBLite consensus disorder prediction 494 508 - -
Vvi3g1061 644 MobiDBLite consensus disorder prediction 493 531 - -
Vvi3g1061 644 ProSiteProfiles Zinc finger SWIM-type profile. 366 404 IPR007527 GO:0008270
Vvi3g1061 644 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 1 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1061 - - - vvi:100251986 1296.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00653 Cmo16g00537 . . . . Cpe14g00417 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365