Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1067 ATGTGGGTTTCTTCAACAAGGTGGGTTTCTTGTAGAAAATTTATCACCCACGTTCAATTAACCCGATTTAATTCTGTTTGGGGTCTTGCCCATTTGAGCCCTGCCGCGCAATACCCAATTGCTGAAGAACAAGCTGTTTATACCTATAGCAAGGACTCTGTTGGTGATCGTTTTATTGATTTAAATACAAGTAGAGTTGTTGAAATCTTTTATAATTTGAAAAACGAGCCTAATCTCGCATGGTCGTTTTTTACCCAATTGAAAGAAAGCGGTTTTCAGCACAATGTTGATACGTATGCGGCTTTAATCAGAGTACTGTGTCGTTGGCGCTTGGAAAGGAAGTTGCAGTCTTTGTTATCGGAGATTGTTGGGTCAAAAGAGAGTGTATTGGGTTTTGATATTACAGCTTTGTTTGATGTTCTGAGGGAGGGAGGGGGGGAAGTTGAGGGTGAGCATTCGAGTGTGTTGATTCTGGTGCTTGATATGTTGGTTAAGGCTTATGTTAGGGTTGGTATGTTTGATGAGGCCATTGATGCTCTGTTTCAAACAAAAAGACGAGGGTTTGTTCCTCATATAATGTCTTGCAATTTTTTGATGAATCGTTTGATTGAACATGGGAAGATTGATATGGCAGTGGCGATTTATCGGCATTTGAAGAGGTTGGGTTTGAACCCAAATGATTATACTTATGGCATTTTCATAAAGGCACTTTGTAGGAAGGGTAATTTTGAAGAAGCTGTTGATGTGTTTAGGGAGATGGAAGAAGCTGGAGTGAACCCTAATGCTGTCACATGCAGTACATATATTGAAGGGCTTTGTTCCCATAAGAGGTCGGATTTGGGTTATGAAGCCCTCCGAGCATTAAGAGCAGCAAATTGGCCAATTGATACCTTTGCTTATACAGCAGTTATTCGTGGGTTTTGTAGTGAGATGAAATTAAAAGAAGCAGAGGACGTCTTCATTGATATGGTAAATGAAGGGATAGCCCCTGATGGGTATATCTATGGTGCCTTAATTCATGCTTATTGCAAGGCTGGGAATTTGCTACAAGCTGTGGCTCTGCACAATGATATGGTGTCAAATGGAATTAAAACAAATTTGGTGGATCAATTTAAGGAGTTCAGGGACTCAGGGATTTTCCTTGATGAGGTTTTGTACAATATTGTGGTGGATGCTCTTTGTAAACTGGGGAAAGTGGAAGAAGCTGTGGAATTGCTGAATGAAATGAAGGGTAGGCGCATGTCTCTGGATGTCGTGCATTATACAACTTTGATTGCTGGGTATTGTCTCCAAGGTAAACTTGTTGATGCTAAGAATATGTTTGAAGAAATGAAGGAAAGGGGCATTGAACCTGATATTGTTACCTATAACATACTAGTTGGTGGGTTTTCTAGAAATGGTCTCAAAAAAGAGGCACTTGAGCTTCTCGATTGCATTGGGACACAAGGCCTGAAACCCAATTCTGCCACACACAACAGGATCATTGAAGGTTTATGTATGGCAGGGAAAGTGAAGGAAGCTGAAGCATTTTTAAATACCTTGGAGGATAAGTGTTTGGAAAATTATAGTGCCATGGTTGATGGGTACTGCAAAGCAAACTTTACAAGAAAGGCATATGAACTATTTTCTAGGCTTTCTAAGCAGGGAATTTTAAGAATGTTGGCTTTGGATGTGGAGCCTAACCAAATTATGTATGGTAAACTCATAGGTGCCTTTTGTCGGGATGGAGATATGAAAAGGGCTCAATTGGTGTTTGATATGTTGGTTGAGAGAGGAATAACTCCTGATGTCATCACCTACACAATGATGATAAATGGTTATTGCAGGGTGAACTGCTTGCGAGAAGCCCGTGATATTTTCAATGATATGAAGGAGAGAGGAATTAAACCTGATGTTATCACTTACACAGTTGTGCTTGATGGTCATTCGAAGACAAACAACCTTCAGGATGCTATTAACCTGTATGATGAAATGATTGCTAGAGGACTACAACCTGATATTGTGACATACACAGCTCTTCTGCCCGGAAAGTGCAATTTCGGTAGTAGACACTTTGATAATCAGTGGCTAGAAGAACCAAAATTATTTATATTAGCCCAACCACGTGGTGTAAGGCTTGAAGAAATGGGAGCTTTGTGGCGGGATGCTTGGAAGCCATTTATTTTCAGGTTAACTCCCTTGTGA 2184 40.38 MWVSSTRWVSCRKFITHVQLTRFNSVWGLAHLSPAAQYPIAEEQAVYTYSKDSVGDRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTALLPGKCNFGSRHFDNQWLEEPKLFILAQPRGVRLEEMGALWRDAWKPFIFRLTPL* 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18336897 18341110 + Vvi3g1067 Vvi3g1067 784742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Vvi3g1067 727 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 4 644 - -
Vvi3g1067 727 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 643 688 - -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat 483 512 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat 378 410 IPR002885 -
Vvi3g1067 727 Gene3D Tetratricopeptide repeat domain 292 367 IPR011990 GO:0005515
Vvi3g1067 727 Pfam Pentatricopeptide repeat domain 654 685 IPR002885 -
Vvi3g1067 727 Gene3D Tetratricopeptide repeat domain 368 466 IPR011990 GO:0005515
Vvi3g1067 727 Gene3D Tetratricopeptide repeat domain 590 686 IPR011990 GO:0005515
Vvi3g1067 727 Gene3D Tetratricopeptide repeat domain 467 589 IPR011990 GO:0005515
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Vvi3g1067 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 644 - -
Vvi3g1067 727 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 643 688 - -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 228 262 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 598 632 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 564 597 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 522 550 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 299 331 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 384 417 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 162 190 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 633 667 IPR002885 -
Vvi3g1067 727 TIGRFAM PPR: pentatricopeptide repeat domain 194 226 IPR002885 -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Vvi3g1067 727 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat 163 188 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat 564 593 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat 522 550 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat 334 363 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat family 595 643 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat family 417 464 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat family 190 239 IPR002885 -
Vvi3g1067 727 Pfam PPR repeat family 296 333 IPR002885 -
Vvi3g1067 727 Gene3D Tetratricopeptide repeat domain 219 291 IPR011990 GO:0005515
Vvi3g1067 727 Gene3D Tetratricopeptide repeat domain 53 218 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1067 - - - vvi:100243250 1280.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1067 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00855 Cam10g0875 Cec10g0905 Cco10g0858 Clacu10g0900 Cmu10g1692 Cre10g1063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005048 2 4 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 3 1 38