Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1068 ATGGCTACATGTGTGTTGTTGCAGCATTTTCATGTGAGTGATAGCTGTTTCTCAAGAACCCCTTATTTGCAGTCTTCTAGAACTTCTCAGCTTTCGAAGCTCAGGCCTGGTGGGTCTTCAATCAGATGCCAATCCACTAGCACGGATAAACAGAAATCAAGAAATCTATTGGACAATGCGAGCAACCTCCTAACCAATTTTTTAAGTGGGGGAAGTATAGGGTCAATGCCTGTAGCTGAAGGTGCAGTTTCTGATCTTTTTGGTCGGCCTCTCTTCTTTTCACTGTATGATTGGTTCATAGAGCATGGCTCAGTGTATAAACTTGCTTTTGGGCCAAAGGCATTTGTTGTTGTGTCAGATCCCATTGTTGCAAGGCATATTCTTCGAGAAAATATCTTTGGTTATGACAAGGGAGTTCTTGCTGATATACTAGAACCAATAATGGGGAAAGGACTCATACCTGCTGACCTTGACACCTGGAAGCAAAGGAGAAGAGTTATTGCTCCTGGGTTCCATGCTTTATACTTGGAAGCTATGACAAAAGTATTTACTGAGTGTTCAGAAAGAGCAATATTGAAATTTGAGAAGCTTCTAGAAGGAGAGCACTTGCATGGGGGAAAGACAATTGAGTTGGATCTTGAAGCTGAGTTTTCAAATTTGGCACTTGACATTATTGGGCTTGGTGTCTTTAACTATGATTTTGGATCTGTCACGAAAGAATCTCCAGTGATAAAGGCAGTATATGGTACTCTTTTTGAAGCTGAGCATAGATCGACCTTCTACATCCCTTATTGGAAAGTTCCTTTGGCAAGATGGATAGTACCAAGGCAGCGAAAGTTCCACAGTGACCTAAAGGTTATTAATGACTGTCTTGATGGACTCATCAAAAATGCAAAAGAGACTAGACAGGAAACAGATGTTGAGAAACTGCAGCAAAGGGACTACCAAAATCTTAAGGATGCAAGTCTTTTGCGGTTTTTAGTTGATATGCGAGGAGCTGATGTGGACGACCGTCAGCTAAGAGATGACCTGATGACAATGCTTATCGCTGGCCATGAAACAACTGCTGCTGTTCTCACTTGGGCTGTTTTCCTACTCGCACAAAATCCCTCCAAGATGAAAAAAGCTCAAGCTGAGATTGATTCAGTTCTTGGTCAGGGCAGAATATCCTTTGAATCACTAAAAAAATTGGAGTACATAAGACTCATTGTTGCAGAGTCTCTCCGTTTGTATCCTCAGCCCCCATTACTGATCAGACGTTCCCTCAAGTCAGATGCATTACCAGGTGGATACAAGGGTAAAAAGGACGGCCACTCAATTCCTGCTGGGACTGATATCTTTCTTTCAGTATATAACCTCCATCGGTCCCCATACTTCTGGGATCGCCCCCATGAATTTGAACCAGAGAGGTTCCTAGTACCAAGGAACAGCGACATTGAAGGATGGTCCGGCTTTGATCCATCACGGAGCCCTGGAGCGTTGTACCCCAATGAGATTGTTGCAGACTTCGCCTTCTTACCCTTTGGTGGAGGGCCGAGAAAATGTGTGGGAGACCAATTTGCACTCATGGAGTCGACCATTGCATTGACCATGTTGCTGCAGAAATTTGATGTTGAGCTGAAAGGAGGTCCAGAATCTGTGGAGTTGGTCACAGGAGCAACAATCCATACCAAGAATGGCCTTTGGTGCAGGATGATGAAGAGGTCTGATCTTCATTAG 1719 43.69 MATCVLLQHFHVSDSCFSRTPYLQSSRTSQLSKLRPGGSSIRCQSTSTDKQKSRNLLDNASNLLTNFLSGGSIGSMPVAEGAVSDLFGRPLFFSLYDWFIEHGSVYKLAFGPKAFVVVSDPIVARHILRENIFGYDKGVLADILEPIMGKGLIPADLDTWKQRRRVIAPGFHALYLEAMTKVFTECSERAILKFEKLLEGEHLHGGKTIELDLEAEFSNLALDIIGLGVFNYDFGSVTKESPVIKAVYGTLFEAEHRSTFYIPYWKVPLARWIVPRQRKFHSDLKVINDCLDGLIKNAKETRQETDVEKLQQRDYQNLKDASLLRFLVDMRGADVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPSKMKKAQAEIDSVLGQGRISFESLKKLEYIRLIVAESLRLYPQPPLLIRRSLKSDALPGGYKGKKDGHSIPAGTDIFLSVYNLHRSPYFWDRPHEFEPERFLVPRNSDIEGWSGFDPSRSPGALYPNEIVADFAFLPFGGGPRKCVGDQFALMESTIALTMLLQKFDVELKGGPESVELVTGATIHTKNGLWCRMMKRSDLH* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18343141 18371399 - Vvi3g1068 Vvi3g1068 784743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1068 572 SUPERFAMILY Cytochrome P450 87 568 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS P450 superfamily signature 350 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS P450 superfamily signature 402 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS P450 superfamily signature 506 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS P450 superfamily signature 515 526 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS E-class P450 group I signature 99 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS E-class P450 group I signature 339 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS E-class P450 group I signature 359 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS E-class P450 group I signature 505 515 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PRINTS E-class P450 group I signature 515 538 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PANTHER CYTOCHROME P450 FAMILY 4 71 568 - -
Vvi3g1068 572 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 508 517 IPR017972 GO:0005506|GO:0016705
Vvi3g1068 572 Gene3D Cytochrome P450 77 572 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi3g1068 572 PANTHER CYTOCHROME P450 97B3, CHLOROPLASTIC 71 568 - -
Vvi3g1068 572 Pfam Cytochrome P450 99 563 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1068 K24543 - vvi:100248381 1153.27