Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1070 ATGAGTCTCAAAGCCATCTCTCTCCCCCTTCTCTTTGCCATATTTGCATCTTTGGCCATGTACACGCATCTCTCTCTTCCAAACAACCCTAAATTTGTTAAACACCTCATTGATCTTAGCCTCAAAACCTTCTCATCATCACCCTTTGTTTCAACTCCCATGGTGTACTCCGCCCTAGACTGCGGCCTCCACCGCCATAAACATCACCAGGACAGCACCACAGGATCCCTTTGCGACGATTTTCCGCCAGATTTCCCCCCTCCAGACACCAACACTACCTCAATTTTATGCGTCGATCGCAACGGTTGCTGCAACTTCACTATGGTGCAGTCTGCAGTCGATGCAGTCAGTGTTCTTAGCCAGAAAAGAACCATAATATGGATCAACTCTGGAGTTTACTATGAAAAGGTCATTATTCCAAAAAACAAGCCAAACATCACATTTCAAGGACAAGGGTTTGCTTCAACTGCAATTGTGTGGAATGACACAGCCAATTCTTCACATGGCACATTTTACAGTGGCTCAGTTCAAGTTTTTGCTGCCAACTTCATTGCTAAGAACATTAGCTTCATGAATGTAGCTCCAATTCCGAAGCCAGGTGATGTTGGAGCACAGGCAGTGGCCATTAGGGTGGCAGGAGACCAGGCGGCGTTCTGGGGTTGTGGGTTCTTTGGATCCCAAGACACGCTTCATGACGACAGGGGTCGACATTACTTCAGGGACTGCTACATCCAGGGTTCCATTGATTTTATTTTCGGAGATGCAAGGTCATTCTACGAGAACTGCCAGTTGATTTCCATGGCTAACCCAGTGCCAGTAGGATCAAAGGTGATAAATGGTGCAATCACAGCACACGGCAGAACTTCCATGGACGAGAACACCGGGTATGCATTTGTGGCCTGCACTGTGGGTGGGACTGGAAGAGTGTGGCTTGGTCGAGCATGGAGGCCCTTTTCTCGTGTTGTTTTTGCTTACACATCCTTGTCTGATATCATCGCCTCTGAGGGTTGGAATGACTTCAATGACCCGACCAGAGACCAGAGTATTTTTTATGGGGAGTACATGTGCAAAGGTCCAGGAGCCAATACAAGTACGAGGGTGCCTTATGCTCAGAAACTCAATGACACACAAGCTTCTATCTTTCTTAATGTGTCTTTCATTGATGCAGACCAATGGTTACAACCTTATGCATAA 1194 46.82 MSLKAISLPLLFAIFASLAMYTHLSLPNNPKFVKHLIDLSLKTFSSSPFVSTPMVYSALDCGLHRHKHHQDSTTGSLCDDFPPDFPPPDTNTTSILCVDRNGCCNFTMVQSAVDAVSVLSQKRTIIWINSGVYYEKVIIPKNKPNITFQGQGFASTAIVWNDTANSSHGTFYSGSVQVFAANFIAKNISFMNVAPIPKPGDVGAQAVAIRVAGDQAAFWGCGFFGSQDTLHDDRGRHYFRDCYIQGSIDFIFGDARSFYENCQLISMANPVPVGSKVINGAITAHGRTSMDENTGYAFVACTVGGTGRVWLGRAWRPFSRVVFAYTSLSDIIASEGWNDFNDPTRDQSIFYGEYMCKGPGANTSTRVPYAQKLNDTQASIFLNVSFIDADQWLQPYA* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18407104 18409640 + Vvi3g1070 Vvi3g1070 784745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1070 397 Pfam Pectinesterase 98 389 IPR000070 GO:0030599|GO:0042545
Vvi3g1070 397 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 396 - -
Vvi3g1070 397 ProSitePatterns Pectinesterase signature 2. 244 253 IPR033131 -
Vvi3g1070 397 Gene3D - 94 397 IPR012334 -
Vvi3g1070 397 SUPERFAMILY Pectin lyase-like 95 396 IPR011050 -
Vvi3g1070 397 PANTHER PECTINESTERASE 8-RELATED 9 396 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1070 - - vvi:100241515 809.29