Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1087 ATGGGGAAGAAGAAGAAGAGAGCAGCGAAGGTGTTTTGCTACTACTGCGAGAGGGAGTTCGAGGACGAGAAGATTCTTGTTCAGCACCAGAAGGCCAAGCACTTCAAGTGCCATGTCTGCAACAAGAAGCTCTCCACCGCCTCTGGCATGGCCATCCACGTCCTCCAGGTCCACAAGGAGACCGTCTCCAAAGTTCCTAATGCTAATCCCGGGAGAGAATCCACTGAAATTGAAATATTTGGAATGCAAGGAATCCCAGATGATATTCTAGCTGCCCATTACGGAGAGCAAGATGAAGATAACCCTTCAAAGCTAGCCAAAGTCGAGGTCCCACCAACTAACGTTGTTGGTGTGATGCCTCCTGGATCAGTGGGCATGGGGTTTCCGCCGCAATCAACATTTGGTGCAATACCACCAATTTACAATTCTGCAGTTGCAGTCCCTCCTGGTTGGCCGGTTCCTCGTCCACAGCCTTGGTTCCCACAGCATCCAGCAGTTCCTGTTCCTCCTGCTGCACCCTTAGGACTCGCACAAAGGCCTTTGTTTCCCATACAAAATGTGACACCTCCTCTGCCATCTGCTACACTTCAACCTTCATTTCAAACTACACCACCTGGACCTCTCTCATCTAGTCCTACTCCTGTATCTCAGCCCTTATTTCCTGTTGTTGGTACTGCAAGTATTCCTAGTCAAAATTCACAAGTTACTGCAGCTGCATTGTCGGCCCCCATTACATCAAGCACCCCTTCAGAACTCAATAACCCTTCATACTCCAGTATTAACACATCTATGGTAAATGGCTACCATGCTCCAAGTATTCAAGGGACATTAGTCAGTTCACATACATATGCTTCCGGTTCAAACACCAGTGGCCCATCGATTGGACCCCCACCGATGATAGCAAACAAAGCTCCGGTAATCCAGCCAGCAAGTAATGAGGTCTACCTTGTATGGGATGATGAGGCGATGTCCATGGAGGAAAGAAGGATGTCATTACTGAAGTATCAGGTGCATGATGAAACTAGCCAGATGAACTCAGTTGATGCAGCCATTGACAGGAGGATATCTGAGGGCAGACTTGCTGGTCGAATGGCTTTCTAG 1101 48.5 MGKKKKRAAKVFCYYCEREFEDEKILVQHQKAKHFKCHVCNKKLSTASGMAIHVLQVHKETVSKVPNANPGRESTEIEIFGMQGIPDDILAAHYGEQDEDNPSKLAKVEVPPTNVVGVMPPGSVGMGFPPQSTFGAIPPIYNSAVAVPPGWPVPRPQPWFPQHPAVPVPPAAPLGLAQRPLFPIQNVTPPLPSATLQPSFQTTPPGPLSSSPTPVSQPLFPVVGTASIPSQNSQVTAAALSAPITSSTPSELNNPSYSSINTSMVNGYHAPSIQGTLVSSHTYASGSNTSGPSIGPPPMIANKAPVIQPASNEVYLVWDDEAMSMEERRMSLLKYQVHDETSQMNSVDAAIDRRISEGRLAGRMAF* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18906656 18917473 + Vvi3g1087 Vvi3g1087 784762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1087 366 PANTHER ZINC FINGER PROTEIN 207 1 366 - -
Vvi3g1087 366 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 366 - -
Vvi3g1087 366 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
Vvi3g1087 366 MobiDBLite consensus disorder prediction 190 214 - -
Vvi3g1087 366 ProSiteProfiles Zinc finger BED-type profile. 6 65 IPR003656 GO:0003677
Vvi3g1087 366 MobiDBLite consensus disorder prediction 190 204 - -
Vvi3g1087 366 SMART c2h2final6 11 34 IPR013087 -
Vvi3g1087 366 SMART c2h2final6 35 58 IPR013087 -
Vvi3g1087 366 Gene3D Classic Zinc Finger 1 65 - -
Vvi3g1087 366 SUPERFAMILY beta-beta-alpha zinc fingers 11 60 IPR036236 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14631 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1087 - - vvi:100251787 662.914