Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1088 ATGGGTTCTGCAGAACTCATCAGACATCGTGTGATTTCTCAGGTTTTGGAATTGGGAATTGTGGTGCATTCTGTAATCATTGGAATATCATTAGGAGCATCTGAGAGTCCAAAAACAATAAAGCCTCTGGTGGCTGCTCTCACCTTCCACCAATTTTTTGAAGGCATGGGCCTTGGAGGTTGCATTGTTCAGGCCAAGTTTAAGCTTCGGGCTGCTGCAATTATGGCGCTGTTCTTCTCCCTAACAACCCCAGTTGGGATAGCGATTGGGATCGGGATATCGAATGTTTATGACGAAAACAGTTCAACAGCACTCATAGTTGAAGGGATTTTCAATGCTGCATCGGCCGGAATCTTGGTATATATGGCGCTGGTGGATCTTCTAGCAGCGGATTTCATGAACCCAAGGATGCAGGGTAATGGAAGGCTTCAAGTTGGGGCCAATATTTCACTTCTCGTTGGGGCTGGTTGCATGTCCCTCCTGGCCAAATGGGCTTAA 498 46.79 MGSAELIRHRVISQVLELGIVVHSVIIGISLGASESPKTIKPLVAALTFHQFFEGMGLGGCIVQAKFKLRAAAIMALFFSLTTPVGIAIGIGISNVYDENSSTALIVEGIFNAASAGILVYMALVDLLAADFMNPRMQGNGRLQVGANISLLVGAGCMSLLAKWA* 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18921814 18923535 - Vvi3g1088 Vvi3g1088 784763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1088 165 TIGRFAM zip: ZIP zinc/iron transport family 4 165 IPR004698 GO:0005385|GO:0016021|GO:0071577
Vvi3g1088 165 PANTHER ZINC/IRON TRANSPORTER 4 165 - -
Vvi3g1088 165 PANTHER ZINC TRANSPORTER 1 4 165 - -
Vvi3g1088 165 Pfam ZIP Zinc transporter 5 162 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1088 K14709 - vvi:100255284 308.145