Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1089 ATGCACCCAGCTTCAGAGTTGAGGAGTGTAGCCAAGTTGAGAAGGATGAGCAAACAGGTAGCCAGACCAAGCTTCCCCATAACGCAAAACCCAGCAAGTCTCTGTTTCTGCTCTCTTTATACTGCCATGGACAAGCGTCTAAGGTTACTGTTCATTCTCTTTATCATAAGGCTCCCAACACTGGTTTTAGGGGAGTGTGCCTGTGATGAAGAGGATGAAGATCGAGACAGAGATAAAGCTCTTAGATATAAGATAGCCGCCATAGCTTCCATACTGGTTGGTGGCACAATTGGGGTGTGCATACCGATTATAGGGAAGAAGATACCGGCTCTTCAACCCGAAAAGAATGTATTCTTCGTTATAAAGGCGTTTGCAGCGGGAGTGATTCTGGCAACCGGCTTCATTCACGTACTTCCTGATGCTTTTGAGAGCTTAACTTCGCCATGTCTCAGTGAGAACCCCTGGGCCAATTTTCCATTTACCGGCTTTGTGGCCATGCTATCGGCTATCGGGACGCTGATGGTGGATATGGGTTCAGACCTCATCAGGCATCGTGTGATTTCTCAGGTTTTGGAATTGGGAATCGTGGCGCATTCTGTGATCATTGGAATATCGTTAGGAGCATCAGAGAGTCCCCAAACAATAAAGCCTCTGGTGGCTGCTCTCACTTTCCACCAATTTTTCGAAGGCATGGGGCTTGGAAGTTGCATTGTTCAGGCCAAGTTCAAGTCTCGGGCTGCTACGATTATGGGGCTGTTCTTCTCCCTCACAACCCCAGTAGGGATAGGTATTGGGATCGGAATATCACAAGTTTATGATGAAAACAGTTCAACAGCCCTTATCATTGAAGGGATTTTCAATGCTGCATCGGCCGGAATCTTGATATATATGGCACTGGTTGATCTTCTAGCCGCAGATTTCATGAGCCCCAAGATGCAGACCAATGAAATGCTTAAAGTTATGGCTAATATTTCACTTCTTCTTGGTGCTGGTTGCATGTCCCTTATTGCCAAATGGGCATAA 1023 46.43 MHPASELRSVAKLRRMSKQVARPSFPITQNPASLCFCSLYTAMDKRLRLLFILFIIRLPTLVLGECACDEEDEDRDRDKALRYKIAAIASILVGGTIGVCIPIIGKKIPALQPEKNVFFVIKAFAAGVILATGFIHVLPDAFESLTSPCLSENPWANFPFTGFVAMLSAIGTLMVDMGSDLIRHRVISQVLELGIVAHSVIIGISLGASESPQTIKPLVAALTFHQFFEGMGLGSCIVQAKFKSRAATIMGLFFSLTTPVGIGIGIGISQVYDENSSTALIIEGIFNAASAGILIYMALVDLLAADFMSPKMQTNEMLKVMANISLLLGAGCMSLIAKWA* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18936109 18943597 - Vvi3g1089 Vvi3g1089 784764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1089 340 PANTHER ZINC TRANSPORTER 1 179 340 - -
Vvi3g1089 340 PANTHER ZINC TRANSPORTER 1 57 177 - -
Vvi3g1089 340 TIGRFAM zip: ZIP zinc/iron transport family 180 340 IPR004698 GO:0005385|GO:0016021|GO:0071577
Vvi3g1089 340 Pfam ZIP Zinc transporter 82 176 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi3g1089 340 Pfam ZIP Zinc transporter 179 337 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi3g1089 340 PANTHER ZINC/IRON TRANSPORTER 179 340 - -
Vvi3g1089 340 PANTHER ZINC/IRON TRANSPORTER 57 177 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1089 K14709 - vvi:100262239 511.916