Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1096 ATGCATTCGCACGATAGACCTCTATCTGCTCAAGGGGACTCTGGGCTTGTCCTCACAACAGATCCAAAACCCCGGCTCCGTTGGACCACTGAGCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATAAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTCTTTACCATCTCAAGAGCCATCTTCAGAAATTCAGACTTGGGAAGCAACCGCATAAGGATTTCAATGATCAAGCAGTTAAGGATGGAGAGAAAGCTTCAGCATTAGGTAATCAAAGAAATGCTACCCCCACGCCTGTCTTAATGGGTCGCAACATAAATGACAGGAACATGCACTTTAATGAAGCACTTAGGATGCAAATGGAGGTACGAAGGAGATTGAATGAACAATTAGAGGTTCAGAGACACCTCCAAATGAGGATTGATGCTCAAGGAAAGTATATGCAAACTATATTGGAGAAAGCTTGTCAAACACTTACAGGCAAAAACGGAGACTGTCAAAGCTACCATGGTGTTGGTAATCAAGGATACACCGAGGTTGGATCCATGAAAGATTTTTCTTCTTCTGTGAACTTCCCATGTCTAGAAGATTTGCACATATATGGAGAGAGGCCTAACCCATACGATAGCAGTAAAGCCCCGATAATTTGGTCCAATGATATGCAACTGCTACAAGAAGTGGGAACAGCAGCGGCATGTATTCCCTCTCAAGAGGATGCTTTCAAAAGCTACTTAAAGCAGCATCATGAAGAAGAAAGCTCAGGCTCTGGTGAAGCTTGA 810 45.06 MHSHDRPLSAQGDSGLVLTTDPKPRLRWTTELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDQAVKDGEKASALGNQRNATPTPVLMGRNINDRNMHFNEALRMQMEVRRRLNEQLEVQRHLQMRIDAQGKYMQTILEKACQTLTGKNGDCQSYHGVGNQGYTEVGSMKDFSSSVNFPCLEDLHIYGERPNPYDSSKAPIIWSNDMQLLQEVGTAAACIPSQEDAFKSYLKQHHEEESSGSGEA* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19070426 19072521 + Vvi3g1096 Vvi3g1096 784771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1096 269 Gene3D - 22 80 - -
Vvi3g1096 269 Pfam Myb-like DNA-binding domain 26 74 IPR001005 -
Vvi3g1096 269 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Vvi3g1096 269 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g1096 269 Coils Coil 124 144 - -
Vvi3g1096 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 78 IPR006447 GO:0003677
Vvi3g1096 269 Pfam MYB-CC type transfactor, LHEQLE motif 121 168 IPR025756 -
Vvi3g1096 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 80 IPR017930 -
Vvi3g1096 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL-LIKE ISOFORM X1 1 255 - -
Vvi3g1096 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 255 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1096 - - - vvi:100255279 535.413
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi2g717 . 193 336 G2-like Transcription Factor Family AT1G32240 66.9 1.6e-38 156.0
Vvi18g841 . 1 160 G2-like Transcription Factor Family AT5G42630 57.5 6.7e-44 174.5
Vvi6g486 . 112 394 G2-like Transcription Factor Family AT5G59570 51.3 1.3e-63 240.4
Vvi11g406 . 1 294 G2-like Transcription Factor Family AT2G03500 58.5 4.5e-89 325.5
Vvi1g270 . 1 238 G2-like Transcription Factor Family AT1G25550 61.4 4.1e-67 251.9
Vvi1g270 . 2 238 G2-like Transcription Factor Family AT3G25790 51.8 3.6e-49 192.2
Vvi9g1111 . 1 449 G2-like Transcription Factor Family AT3G13040 51.0 1.1e-93 340.9
Vvi6g486 . 112 361 G2-like Transcription Factor Family AT3G46640 55.4 8.2e-67 251.1
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT5G05090 51.9 3.5e-39 159.1
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT4G13640 69.8 6.1e-61 231.5
Vvi5g894 . 1 213 G2-like Transcription Factor Family AT3G24120 74.4 4.5e-80 295.0
Vvi8g1362 ECH 28 214 G2-like Transcription Factor Family AT3G24120 54.4 6.8e-44 174.9
Vvi19g1171 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 7.1e-41 164.9
Vvi3g1096 . 12 167 G2-like Transcription Factor Family AT3G24120 56.8 5.1e-39 158.7
Vvi1g923 . 1 287 G2-like Transcription Factor Family AT1G69580 54.2 6.5e-59 224.9
Vvi19g1171 . 1 327 G2-like Transcription Factor Family AT1G79430 59.0 1.5e-90 330.1
Vvi3g1096 . 5 212 G2-like Transcription Factor Family AT1G79430 61.9 3.8e-57 219.2
Vvi5g894 . 16 191 G2-like Transcription Factor Family AT1G79430 60.4 5.0e-41 165.6
Vvi6g486 . 128 310 G2-like Transcription Factor Family AT3G10760 53.4 2.3e-40 163.3
Vvi6g486 . 133 310 G2-like Transcription Factor Family AT2G40970 51.9 1.9e-39 159.8
Vvi7g615 . 8 323 G2-like Transcription Factor Family AT4G28610 51.1 4.9e-69 258.8
Vvi14g670 . 67 313 G2-like Transcription Factor Family AT4G28610 52.6 2.0e-54 210.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14632 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Vvi TF