Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1096 ATGCATTCGCACGATAGACCTCTATCTGCTCAAGGGGACTCTGGGCTTGTCCTCACAACAGATCCAAAACCCCGGCTCCGTTGGACCACTGAGCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATAAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTCTTTACCATCTCAAGAGCCATCTTCAGAAATTCAGACTTGGGAAGCAACCGCATAAGGATTTCAATGATCAAGCAGTTAAGGATGGAGAGAAAGCTTCAGCATTAGGTAATCAAAGAAATGCTACCCCCACGCCTGTCTTAATGGGTCGCAACATAAATGACAGGAACATGCACTTTAATGAAGCACTTAGGATGCAAATGGAGGTACGAAGGAGATTGAATGAACAATTAGAGGTTCAGAGACACCTCCAAATGAGGATTGATGCTCAAGGAAAGTATATGCAAACTATATTGGAGAAAGCTTGTCAAACACTTACAGGCAAAAACGGAGACTGTCAAAGCTACCATGGTGTTGGTAATCAAGGATACACCGAGGTTGGATCCATGAAAGATTTTTCTTCTTCTGTGAACTTCCCATGTCTAGAAGATTTGCACATATATGGAGAGAGGCCTAACCCATACGATAGCAGTAAAGCCCCGATAATTTGGTCCAATGATATGCAACTGCTACAAGAAGTGGGAACAGCAGCGGCATGTATTCCCTCTCAAGAGGATGCTTTCAAAAGCTACTTAAAGCAGCATCATGAAGAAGAAAGCTCAGGCTCTGGTGAAGCTTGA 810 45.06 MHSHDRPLSAQGDSGLVLTTDPKPRLRWTTELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDQAVKDGEKASALGNQRNATPTPVLMGRNINDRNMHFNEALRMQMEVRRRLNEQLEVQRHLQMRIDAQGKYMQTILEKACQTLTGKNGDCQSYHGVGNQGYTEVGSMKDFSSSVNFPCLEDLHIYGERPNPYDSSKAPIIWSNDMQLLQEVGTAAACIPSQEDAFKSYLKQHHEEESSGSGEA* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19070426 19072521 + Vvi3g1096 Vvi3g1096 784771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1096 269 Gene3D - 22 80 - -
Vvi3g1096 269 Pfam Myb-like DNA-binding domain 26 74 IPR001005 -
Vvi3g1096 269 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Vvi3g1096 269 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g1096 269 Coils Coil 124 144 - -
Vvi3g1096 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 78 IPR006447 GO:0003677
Vvi3g1096 269 Pfam MYB-CC type transfactor, LHEQLE motif 121 168 IPR025756 -
Vvi3g1096 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 80 IPR017930 -
Vvi3g1096 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL-LIKE ISOFORM X1 1 255 - -
Vvi3g1096 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 255 IPR044848 GO:0003700
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14632 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1096 - - vvi:100255279 535.413