Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1097 ATGGCAAGTTGTGGATTTGGGGCAAAGGCGATGGTGGACGCTTGGGCTTTGGTCAGGAGTACCCTGCTTTTCTGCCTACGCTTAATCCCAATTTGGATTCAATTCGTTCTACTGCTCTTGGTGGCGTTCATTCGGTGGCTCTCAGCTCGCTTGGCCAAGTTTTCACATGTTTGCAGGGGCTATGGTGGATTTGGCGCTCTTGGGCATTCTGTTTATCATAGGGAACTTCTCCCTAGAATGGTGGAAGGCTCTTGGAATGCCAAAATACGGCATATTGCAACTGCTGGGACACATACTGCTGCTATCACTGAATCAGGTGAACTTTATACTTGGGGTCGAGATCAAGGGGATGGTAGACTGGGCCTTGGTCCTAACTGTGGTCCAAATGAGGGAGGTGGACTTAGTATCCCTTCCAAAGTGAAAGCATTACCTGTGCCTGTAGCTGCTGTTTCCTGTGGTGGTTTTTTCACAATGGTGCTGACTCAGGAGGGCCAACTTTGGAACTGGGGAGCAAACTCCAACTATGAGCTTGGAAGAGGTGATAAGGTTGGAGGTTGGAAACCACAACCAATTCCTAGCCTGCAGGATGTTCGTATCATCCAGATAGCTAGTGGTGGATATCACTCTCTTGCATTAACAGATGATGGCAAAGTACTTTCATGGGGTTATGGTCAACATGGTCAGCTGGGTCATTCCTCCATCGAAAATCAGAAAATACCTACAGTGATTGAGGCTTTAGCTGATGAGCATGTCATCTATATTGCTTGTGGAGGTTCATCTTCAGCAGCTATAACAGATAACGGGAAGCTGTACATGTGGGGAAATGCCAAGGACTCTCAATTAGGCGTTCCTGGGCTGCCAGAGACACAACCATTGCCTGTTGAAGTAAAGTTTCTTATGGAGGATGATAGATTGGGACCACACAATGTGCTATCTGTTGCAGTTGGTGCATCTCATGCCATGTGCTTGGTTTCAAGGTCAGGTTGTTAA 990 47.27 MASCGFGAKAMVDAWALVRSTLLFCLRLIPIWIQFVLLLLVAFIRWLSARLAKFSHVCRGYGGFGALGHSVYHRELLPRMVEGSWNAKIRHIATAGTHTAAITESGELYTWGRDQGDGRLGLGPNCGPNEGGGLSIPSKVKALPVPVAAVSCGGFFTMVLTQEGQLWNWGANSNYELGRGDKVGGWKPQPIPSLQDVRIIQIASGGYHSLALTDDGKVLSWGYGQHGQLGHSSIENQKIPTVIEALADEHVIYIACGGSSSAAITDNGKLYMWGNAKDSQLGVPGLPETQPLPVEVKFLMEDDRLGPHNVLSVAVGASHAMCLVSRSGC* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19077044 19089362 - Vvi3g1097 Vvi3g1097 784772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1097 329 PANTHER OS09G0560450 PROTEIN 46 327 - -
Vvi3g1097 329 Gene3D - 184 328 IPR009091 -
Vvi3g1097 329 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 202 212 IPR000408 -
Vvi3g1097 329 PRINTS Chromosome condensation regulator RCC1 signature 92 108 IPR000408 -
Vvi3g1097 329 PRINTS Chromosome condensation regulator RCC1 signature 205 223 IPR000408 -
Vvi3g1097 329 PRINTS Chromosome condensation regulator RCC1 signature 263 284 IPR000408 -
Vvi3g1097 329 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 106 163 IPR000408 -
Vvi3g1097 329 SUPERFAMILY RCC1/BLIP-II 58 325 IPR009091 -
Vvi3g1097 329 Gene3D - 49 183 IPR009091 -
Vvi3g1097 329 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 215 IPR000408 -
Vvi3g1097 329 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 216 267 IPR000408 -
Vvi3g1097 329 Pfam Regulator of chromosome condensation (RCC1) repeat 105 160 IPR000408 -
Vvi3g1097 329 Pfam Regulator of chromosome condensation (RCC1) repeat 215 264 IPR000408 -
Vvi3g1097 329 Pfam Regulator of chromosome condensation (RCC1) repeat 163 212 IPR000408 -
Vvi3g1097 329 Pfam Regulator of chromosome condensation (RCC1) repeat 267 323 IPR000408 -
Vvi3g1097 329 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 326 IPR000408 -
Vvi3g1097 329 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 46 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1097 - - - vvi:100260362 535.798
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012095 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28