Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g11 ATGGGGGTGATGGGGCTATCTTTTTCTTCTGCAGTTGCTACTGTGGTTATTGTTTTGGGTTCGGTGTTGAATGCAGCAGTGGTGTGTCATGGAGGAATCACGAGTAGTTTTGTGAGGAAGGTTGAAAAAACCATTGATATGCCTCTTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAGGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGGGTCACTGTGGATGAACCAGGCTCAAACACAGTGCTCTACTGGAGTGAAAACTCCAAGCGCAAGAACAGAGCTGAGGGAATCATGGTTACCTATAAATTCTACAATTACACTTCTGGTTACATTCATCATTGCACTATCAAGAATTTGGAGTTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAGTTTTGGTTTGTAACTCCTCCTAAAGTTGGCCCAGATGTTCCATACACTTTTGGTCTTATAGGGGATCTTGGGCAGAGTTATGATTCAAATATGACACTTACGCACTATGAATTGAACCCTGCAAAGGGAAAAACCGTGTTGTTTGTTGGAGACCTTTCATATGCTGATAACTACCCGAACCATGATAACGTTAGGTGGGATACATGGGGAAGGTTCACTGAGAGAAGTACTGCTTATCAACCTTGGATATGGACTGCAGGAAACCATGAGATTGATTTTGTTCCTGAAATTGGTGAGTTTATACCCTTTAAGCCTTATAGTCATCGATATCATGTTCCCTACAGAGCATCAGATAGTACCGCTCCCTTCTGGTACTCTATCAAGAGGGCTTCTGCATATATCATTGTCTTGGCATCATACTCAGCATATGGAAAATATACTCCTCAGTATAAGTGGCTTGAAAAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGCTAATTGTTCTTATGCATTCCCCATGGTATAACAGTTACAACTATCATTATATGGAAGGGGAAACCATGAGAGTAATGTACGAGCCATGGTTTGTGCAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTACGAACGATCTGAACGTGTGTCCAACATTGCTTATAACGTCATAAACGGCATTTGCACTCCTGTAAATGACCAGTCTGCACCAGTATACATCACCATTGGAGATGGGGGAAATCTCGAAGGCCTGGCAACCAACATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACATCAAGAACCGAACCCATGCTCACTATAGTTGGCACCGCAACCAAGATGGATATGCCGTGAAAGCTGATTCCTTATGGTTTTTCAACAGGTTCTGGCATCCAGAAGACGATTCCACAAGCACCCAGTCATGA 1419 43.55 MGVMGLSFSSAVATVVIVLGSVLNAAVVCHGGITSSFVRKVEKTIDMPLDSDVFRVPLGYNAPQQVHITQGDHEGRGVIVSWVTVDEPGSNTVLYWSENSKRKNRAEGIMVTYKFYNYTSGYIHHCTIKNLEFNTKYYYVVGIGHTPRKFWFVTPPKVGPDVPYTFGLIGDLGQSYDSNMTLTHYELNPAKGKTVLFVGDLSYADNYPNHDNVRWDTWGRFTERSTAYQPWIWTAGNHEIDFVPEIGEFIPFKPYSHRYHVPYRASDSTAPFWYSIKRASAYIIVLASYSAYGKYTPQYKWLEKELPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERVSNIAYNVINGICTPVNDQSAPVYITIGDGGNLEGLATNMTEPQPKYSAYREASFGHAIFDIKNRTHAHYSWHRNQDGYAVKADSLWFFNRFWHPEDDSTSTQS* 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 173839 177946 - Vvi3g11 Vvi3g11 783686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g11 472 Pfam Calcineurin-like phosphoesterase 165 363 IPR004843 GO:0016787
Vvi3g11 472 Pfam Iron/zinc purple acid phosphatase-like protein C 389 448 IPR025733 -
Vvi3g11 472 Gene3D - 62 158 - -
Vvi3g11 472 PANTHER ACID PHOSPHATASE RELATED 10 470 IPR039331 GO:0003993
Vvi3g11 472 CDD MPP_PAPs 160 458 IPR041792 -
Vvi3g11 472 Pfam Purple acid Phosphatase, N-terminal domain 63 145 IPR015914 GO:0003993|GO:0046872
Vvi3g11 472 SUPERFAMILY Metallo-dependent phosphatases 160 466 IPR029052 -
Vvi3g11 472 SUPERFAMILY Purple acid phosphatase, N-terminal domain 45 156 IPR008963 GO:0003993|GO:0046872
Vvi3g11 472 PANTHER PURPLE ACID PHOSPHATASE 10 470 - -
Vvi3g11 472 Gene3D - 159 468 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g11 K22390 ACP7; acid phosphatase type 7 - vvi:100246877 1006.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g11 Vvi18g1026 ECH
Vvi3g11 Vvi18g1025 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g11 . . . . . . . . . . . . . . . Cpe04g00114 . . . . . . . . Cla02g00499 Cam02g0509 Cec02g0509 Cco02g0515 Clacu02g0511 Cmu02g0507 Cre02g0840 . . . . . . . Cme01g01364 Blo04g00527 . . Bda14g00570 . . Bma03g00564 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01126 . Chy01g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97