Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1100 ATGCGACCTCGTACTGTGGACGATGTGGTGGGCCAAGACCATCTTCTCTCTCACAAATCCCTGCTTCGCTCGGCCATCGATTCCAACCGTCTTCCTTCTATAATCCTATGGGGCCCACCGGGCACCGGCAAGACCTCCATTGCCAAGGCCATTGTCAATTCCTCCTCCCAGCCTTCCTCCTATCGATTTGTTTCCTTATCGGCTGTCACTGCTGGTGTCAAGGACGTGAGGGACGTCGTGGAGGAGGCTAGAAAGATTAAAGTGTCAAAGAACATGAACAGCAAGAGAACATTGTTGTTTGTGGATGAGGTTCATCGTTTCAACAAGTCTCAACAAGACTCTTTTTTGCCTGTAATTGAAGATGGGAGCATCGTGTTTATTGGAGCTACAACCGAGAATCCATCATTCCATTTGATAACGCCCTTGTTGTCTCGCTGTCGAGTTCTCACCCTCAACCCTTTACAGCCTAGTCATGTTGCTAGCCTGCTTAATCGAGCTGTTGCTGACACGGGCAGGGGATTGGCTTGGAGCGTGGGTGGGGCGAGTATTGAAGTCAGCGATGATGCCATTGATTTTTTGTCCTCACATTGTGATGGCGATGCTCGTGTGGCATTAAACGCCTTGGAAATTTCTGCTGTCACTGCAGCTGCTCGAGAGGCGCTGCAATCTAAGCATCTTGCTTATGACAAAGCAGGGGAAGAACACTACAATCTCATCAGTGCCCTCCACAAATCGATGAGGGGTAGTGATGCGGATGCCTCAATTTATTGGCTGGCAAGAATGTTAGAAGGAGGTGAAGAACCTTTGTATATTGCCAGGAGACTCATCAGGTTTGCAAGTGAGGATGTTGGATTGGCTGACCCCATTGCCCTTGTGCAGGCTGTTGCTTGCTGCCAAGCTTGCCATTTTTTGGGCATGCCTGAGTGCAATGTGAATCTTGCACAATGTGTGGCTTACTTGGCTTTGGCTCCCAAATCTGTTTCTGTGTATCGAGCCATTTTGGCTGCACAGGAGGTAGTGAGGGAATCTGTTGGACAGAATGAGGGAGTGCCTCTTCATCTCAGGAATGCACCCACTAAACTAATGAAGGAACTTGGATACGGGAAGGGCTATATCTACCCACCTGACAATCCTTCCTCTTCTACACAGAACTATCTACCACCATCACTTCAAGGTTACAAGTTTCTCAATTGA 1194 48.58 MRPRTVDDVVGQDHLLSHKSLLRSAIDSNRLPSIILWGPPGTGKTSIAKAIVNSSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPSHVASLLNRAVADTGRGLAWSVGGASIEVSDDAIDFLSSHCDGDARVALNALEISAVTAAAREALQSKHLAYDKAGEEHYNLISALHKSMRGSDADASIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPIALVQAVACCQACHFLGMPECNVNLAQCVAYLALAPKSVSVYRAILAAQEVVRESVGQNEGVPLHLRNAPTKLMKELGYGKGYIYPPDNPSSSTQNYLPPSLQGYKFLN* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19131621 19132932 + Vvi3g1100 Vvi3g1100 784775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1100 397 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 397 - -
Vvi3g1100 397 CDD AAA 10 147 - -
Vvi3g1100 397 Gene3D - 1 152 IPR027417 -
Vvi3g1100 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 222 IPR027417 -
Vvi3g1100 397 Gene3D - 225 325 - -
Vvi3g1100 397 SMART AAA_5 30 154 IPR003593 -
Vvi3g1100 397 Pfam AAA C-terminal domain 181 247 IPR032423 -
Vvi3g1100 397 Pfam MgsA AAA+ ATPase C terminal 248 395 IPR021886 -
Vvi3g1100 397 CDD HLD_clamp_RarA 154 216 - -
Vvi3g1100 397 SUPERFAMILY post-AAA+ oligomerization domain-like 232 396 IPR008921 GO:0003677|GO:0006260
Vvi3g1100 397 Pfam ATPase family associated with various cellular activities (AAA) 34 148 IPR003959 GO:0005524|GO:0016887
Vvi3g1100 397 Gene3D - 154 224 - -
Vvi3g1100 397 Gene3D - 326 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1100 K07478 ycaJ; putative ATPase - vvi:100258647 756.903
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00651 . . . . . . Cpe01g00548 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013516 0 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25