Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1101 ATGATAAGGGACGCCCAGGACTGCGTGTGCCAAGCAATAGAGGCCGCGGACGGAGGCGGAAAGTTCAAGGAGGACGTGTGGTCGAGACCTGGTGGCGGCGGCGGCATCAGCCGAGTCTTGCAGGACGGTGCTGTTTGGGAGAAGGCCGGCGTTAATGTTTCCGTTGTTTACGGTGTTATGCCTCCTGAAGCCTATAGAGCTGCCAAGCCTGCTTCCAGCACTGACTCCTCCTCTGATCTCAACCACAAGCCTGGACCTGTTCCATTTTTTGCTGCCGGGATTAGCTCGGTTTTACATCCAAAGAACCCATTTGCACCCACACTGCATTTTAATTATCGGTATTTTGAGACTGATGCTCCGAAAGATACTCCTGGAGCACCTAGACAGTGGTGGTTTGGTGGTGGTACTGATTTAACCCCTGCTTACATCTTTGAGGAGGACGTCAAGCACTTCCATTCGGTTCAAAAAAGTGCTTGTGACAAATTCGATCCTAGCTTCTATCCCCGATTCAAGAAATGGTGTGATGATTATTTTTATATTAAGCATCGAGGTGAGAGGCGTGGACTTGGAGGAATATTTTTTGACGATCTTAATGACTATGACCAGGAGATGCTTCTTTCTTTCGCCACTGAATGTGCTAATTCTGTGGTCCCAGCATACTTACCCATTATAGAGAAAAGGAAGGACGTGCCATTTACAGATCGCCACAAGGCATGGCAGCAGTTGCGCAGAGGCCGCTATGTAGAATTCAACTTGGTTTATGATCGGGGTACAACATTTGGACTGAAGACAGGAGGTCGAATTGAGAGCATTCTTGTTTCTCTCCCACTAACTGCACGGTGGGAATATGACCATCAACCAGAAGAGGGGAGTGAAGAATGGAAACTATTGGATGCTTGTATCAACCCAAAGGAATGGATCTAA 924 48.05 MIRDAQDCVCQAIEAADGGGKFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPEAYRAAKPASSTDSSSDLNHKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSVQKSACDKFDPSFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVVPAYLPIIEKRKDVPFTDRHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHQPEEGSEEWKLLDACINPKEWI* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19133600 19138570 - Vvi3g1101 Vvi3g1101 784776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1101 307 PRINTS Coprogen oxidase signature 20 36 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 PRINTS Coprogen oxidase signature 37 58 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 PRINTS Coprogen oxidase signature 91 115 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 PRINTS Coprogen oxidase signature 130 152 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 PRINTS Coprogen oxidase signature 167 196 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 PRINTS Coprogen oxidase signature 239 266 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 PRINTS Coprogen oxidase signature 267 293 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 Pfam Coproporphyrinogen III oxidase 1 306 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 SUPERFAMILY Coproporphyrinogen III oxidase 2 307 IPR036406 GO:0004109|GO:0006779
Vvi3g1101 307 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 1 307 IPR001260 GO:0004109|GO:0006779
Vvi3g1101 307 PANTHER BNAA09G50920D PROTEIN 1 307 - -
Vvi3g1101 307 ProSitePatterns Coproporphyrinogen III oxidase signature. 171 195 IPR018375 GO:0004109|GO:0006779
Vvi3g1101 307 Gene3D Coproporphyrinogen III oxidase, aerobic 1 307 IPR036406 GO:0004109|GO:0006779
Vvi3g1101 307 PIRSF Coproporphyri_ox 1 307 IPR001260 GO:0004109|GO:0006779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1101 K00228 CPOX, hemF; coproporphyrinogen III oxidase [EC:1.3.3.3] - vvi:100243271 657.136
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00542 . . . . Cpe14g00420 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009248 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34