Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g111 ATGGATCATCAGAACCCCGAAGCTTTCTGCCAGTCCACTCACTACCCACCTCCTGACCCGCGTGTCTCCTCCACTCGCTCACACCCAGACTCCAGCAAGAGGTCTGAGGGGGAATTCAAGGATTTTGTTACTGCAAGGAAGGTTCAGAAGGCTGATAGGGAGAAATTGAGGAGGGATCGGTTGAATGAGCAGTTTATAGAGTTGGGAAATGCCTTAGATCCTGATAGGCCCAAAAATGATAAAGCAACCATTCTTTCTGATACAATTCAATTGCTCAAGGACTTGACAGCCCAAGTTGAGAAACTGAAAGCTGAGAATGCATCACTAAATGAAGAATCCCGTGAGTTAACTCAGGAGAAGAATGATCTCAGAGAAGAGAAGGCATCCCTCAAATCGGCTACTGAGAACCTTAATGTTCAGTATCAACAGAGACTCAGAGCTATGTTCCCATGGTCTGCCATTGATCCCTCAGTTGTTGTAAGTCCACCTTCTTACCCGTTTCCAGTGCCAGTCCCAGTGCCTATCCCTACAGGTTCAATTCCCATGCATCCATCTATGCAGCCATATCCTTTCTTTGGAAGTCAGAACACTGGGATCATTCCTAACCCCTGTTCGACTTTTGTTCCATACTTTACTCCAAATACCCTGATTGAACCACAGTCAACACAACATGTATCTCCACCTATGCAACCAGGCAGTACGTCCAACATTTCAAGCAAACAGGATTCCAAGAATGAGTCACCAGGGGAGAGCAAGAGTGAAAAAGGTGAAGATTCTACTGATGTTGCAACAGACCTGCAGCTCAAGACACCTGGATCTAAATCTGATCAGGAAGTATCATCAGGGCAACAGCAACACAAACCCAAGAGATCTCTGAGTAAGGAAAAGAACAGTACAGAAGGGAGCTCTTCAAGTAGGTGTTCTTCGTCTCCTAGTGTACAGGATAGCTCCTCAAATAGTGTAGTTGGTGGCAGAAAGGCTGACGACTGA 990 45.96 MDHQNPEAFCQSTHYPPPDPRVSSTRSHPDSSKRSEGEFKDFVTARKVQKADREKLRRDRLNEQFIELGNALDPDRPKNDKATILSDTIQLLKDLTAQVEKLKAENASLNEESRELTQEKNDLREEKASLKSATENLNVQYQQRLRAMFPWSAIDPSVVVSPPSYPFPVPVPVPIPTGSIPMHPSMQPYPFFGSQNTGIIPNPCSTFVPYFTPNTLIEPQSTQHVSPPMQPGSTSNISSKQDSKNESPGESKSEKGEDSTDVATDLQLKTPGSKSDQEVSSGQQQHKPKRSLSKEKNSTEGSSSSRCSSSPSVQDSSSNSVVGGRKADD* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1252096 1255340 - Vvi3g111 Vvi3g111 783786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g111 329 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Vvi3g111 329 MobiDBLite consensus disorder prediction 297 323 - -
Vvi3g111 329 Coils Coil 85 140 - -
Vvi3g111 329 MobiDBLite consensus disorder prediction 218 244 - -
Vvi3g111 329 MobiDBLite consensus disorder prediction 263 287 - -
Vvi3g111 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 115 IPR036638 GO:0046983
Vvi3g111 329 MobiDBLite consensus disorder prediction 1 55 - -
Vvi3g111 329 SMART finulus 51 101 IPR011598 GO:0046983
Vvi3g111 329 MobiDBLite consensus disorder prediction 245 262 - -
Vvi3g111 329 MobiDBLite consensus disorder prediction 106 127 - -
Vvi3g111 329 MobiDBLite consensus disorder prediction 218 329 - -
Vvi3g111 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Vvi3g111 329 MobiDBLite consensus disorder prediction 26 55 - -
Vvi3g111 329 PANTHER TRANSCRIPTION FACTOR BHLH121 23 328 - -
Vvi3g111 329 Gene3D - 44 124 IPR036638 GO:0046983
Vvi3g111 329 PANTHER TRANSCRIPTION FACTOR BHLH121 23 328 IPR044579 GO:0003700|GO:0055072
Vvi3g111 329 CDD bHLH_AtILR3_like 50 124 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g111 Vvi4g1114 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14633 PF00010 HLH 3.00E-08 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g111 - - vvi:100257183 573.933