Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi3g111 | ATGGATCATCAGAACCCCGAAGCTTTCTGCCAGTCCACTCACTACCCACCTCCTGACCCGCGTGTCTCCTCCACTCGCTCACACCCAGACTCCAGCAAGAGGTCTGAGGGGGAATTCAAGGATTTTGTTACTGCAAGGAAGGTTCAGAAGGCTGATAGGGAGAAATTGAGGAGGGATCGGTTGAATGAGCAGTTTATAGAGTTGGGAAATGCCTTAGATCCTGATAGGCCCAAAAATGATAAAGCAACCATTCTTTCTGATACAATTCAATTGCTCAAGGACTTGACAGCCCAAGTTGAGAAACTGAAAGCTGAGAATGCATCACTAAATGAAGAATCCCGTGAGTTAACTCAGGAGAAGAATGATCTCAGAGAAGAGAAGGCATCCCTCAAATCGGCTACTGAGAACCTTAATGTTCAGTATCAACAGAGACTCAGAGCTATGTTCCCATGGTCTGCCATTGATCCCTCAGTTGTTGTAAGTCCACCTTCTTACCCGTTTCCAGTGCCAGTCCCAGTGCCTATCCCTACAGGTTCAATTCCCATGCATCCATCTATGCAGCCATATCCTTTCTTTGGAAGTCAGAACACTGGGATCATTCCTAACCCCTGTTCGACTTTTGTTCCATACTTTACTCCAAATACCCTGATTGAACCACAGTCAACACAACATGTATCTCCACCTATGCAACCAGGCAGTACGTCCAACATTTCAAGCAAACAGGATTCCAAGAATGAGTCACCAGGGGAGAGCAAGAGTGAAAAAGGTGAAGATTCTACTGATGTTGCAACAGACCTGCAGCTCAAGACACCTGGATCTAAATCTGATCAGGAAGTATCATCAGGGCAACAGCAACACAAACCCAAGAGATCTCTGAGTAAGGAAAAGAACAGTACAGAAGGGAGCTCTTCAAGTAGGTGTTCTTCGTCTCCTAGTGTACAGGATAGCTCCTCAAATAGTGTAGTTGGTGGCAGAAAGGCTGACGACTGA | 990 | 45.96 | MDHQNPEAFCQSTHYPPPDPRVSSTRSHPDSSKRSEGEFKDFVTARKVQKADREKLRRDRLNEQFIELGNALDPDRPKNDKATILSDTIQLLKDLTAQVEKLKAENASLNEESRELTQEKNDLREEKASLKSATENLNVQYQQRLRAMFPWSAIDPSVVVSPPSYPFPVPVPVPIPTGSIPMHPSMQPYPFFGSQNTGIIPNPCSTFVPYFTPNTLIEPQSTQHVSPPMQPGSTSNISSKQDSKNESPGESKSEKGEDSTDVATDLQLKTPGSKSDQEVSSGQQQHKPKRSLSKEKNSTEGSSSSRCSSSPSVQDSSSNSVVGGRKADD* | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1252096 | 1255340 | - | Vvi3g111 | Vvi3g111 | 783786 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi3g111 | 329 | Pfam | Helix-loop-helix DNA-binding domain | 46 | 95 | IPR011598 | GO:0046983 | |
Vvi3g111 | 329 | MobiDBLite | consensus disorder prediction | 297 | 323 | - | - | |
Vvi3g111 | 329 | Coils | Coil | 85 | 140 | - | - | |
Vvi3g111 | 329 | MobiDBLite | consensus disorder prediction | 218 | 244 | - | - | |
Vvi3g111 | 329 | MobiDBLite | consensus disorder prediction | 263 | 287 | - | - | |
Vvi3g111 | 329 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 45 | 115 | IPR036638 | GO:0046983 | |
Vvi3g111 | 329 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Vvi3g111 | 329 | SMART | finulus | 51 | 101 | IPR011598 | GO:0046983 | |
Vvi3g111 | 329 | MobiDBLite | consensus disorder prediction | 245 | 262 | - | - | |
Vvi3g111 | 329 | MobiDBLite | consensus disorder prediction | 106 | 127 | - | - | |
Vvi3g111 | 329 | MobiDBLite | consensus disorder prediction | 218 | 329 | - | - | |
Vvi3g111 | 329 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 45 | 95 | IPR011598 | GO:0046983 | |
Vvi3g111 | 329 | MobiDBLite | consensus disorder prediction | 26 | 55 | - | - | |
Vvi3g111 | 329 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 23 | 328 | - | - | |
Vvi3g111 | 329 | Gene3D | - | 44 | 124 | IPR036638 | GO:0046983 | |
Vvi3g111 | 329 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 23 | 328 | IPR044579 | GO:0003700|GO:0055072 | |
Vvi3g111 | 329 | CDD | bHLH_AtILR3_like | 50 | 124 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14633 | PF00010 | HLH | 3.00E-08 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi3g111 | - | - | vvi:100257183 | 573.933 |