Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g117 ATGGGATCACCTCCCATTTGTGGAGGAACACTTCTGGGCTTCTGGGTGTTCCTGCTTTTTTCTGTGATCTTCTGCTATGGCAGTGCTGATCAATTTGAGGTAGTTGGAGTTGTAGAATGTGCAGACTGTTCTGAGAGTCGTATTAAGGCTAGCCCAGCCTTTTCAGGGCTTGGTGTGACCATTGACTGCAAGCTAGCAAATGGAGAGTTCAAAACAAGGGCAGTTGGAGATGTCAGCAATGAAGGAAAATTCAAGGTGTCTCTCCCTGAGGAGATGGTGAAGGATGGATATCAGTTGAAAGAAGAATGCTTTGCACAGCTTCACAGTGCCTCAGCAGCACCATGTCCTGATGCACAGAGCGGCCTAGAGGCCTCCAAGATAGTCTTGAAGGCGAAAACTATTGGGAAGAAAAACGTATTTGGCCCAATCGCAAATCTAAAATTCTCTTCTCTAACTTGCACTTCAGCCCTTTGGTGGTCTTTCTACAAGCATCCTCCCCTGCCCAAGCTGCCACTGCCCTTTCCCAAGGCCTATCCTCCACCTTGGAAGAAATTTGGCCATGTCTACAAGAAGCCACTTCCACCATCAATACCAATATACAAAAAGCCCCTCCCATCTCCAGTCCACAAGAAGCTGCTTCCACCCAAGGTACTCATACACAAGAAGCCTCTTCCACCAAAAGTACTGAAACCCAATAAGCCATTCCCACCACCTTCGCCAGTTTACAAGAAGCCTTTTCCTCCATCTTTGCTTCCACCCCATGTCCCCATATACAAAAAGCCGCTTCTGCCTCCCACTCCAATCTACAATAAGCCAAATCCACCACCATTCTATAAATGGTCAATTCACAAGCCAATACCACCAGTCTACAAACTTCTTCCTCCAATCCCTCCACTTTACAAGAAGCCATGTCCACCCATTCTTAAGCCTCCTCATTATCTTCCTAAGCTTCCTCCAAAGCTCTTTCCCTTCCCCAACTTCTGCTATGGCAATGCTGATCAAGTTCAGGTAGTTGGAATTGTAGAATGTGCAGACTGTTCTGAGAGTCATATTAAGGCTAGCCAAGCCTTTTCAGGACTTGGTGTGACCATTGACTGCAAGCTAGCAAATGGAGAGTTCAAAACAAGGGCATTTGGAGTGGTCAGCAATGAAGGAAAATTCAAGGTGTCTCTCCCTGAGGAGATGGTGAAGGATGGATATCAGTTGAAAGAAGAATGCTTTGCACAGCTTCACAGTGCCTCAGCAGCACCATGTTCTGATGCACAGAGCGGCCTAAAGGCCTCCAAGATTGTCTTGAAGGCGAAAACTATTGGGAAGAAAAACGACTTTGGCCCAATCGAAAATCTAAAATTCTCTTCTCTAACTTGCACTTCAGCCCTTTGGTGGTCTTTCTACAAGCATCCTCCCCTGCCCAAGCTGCCACTGCCCTTCCCCAAGGCCTATCCTCCACCTTGGAAGAAATTTGGCCATGTCTACAAGAAACCACTTCCACCATCAATACCAATATACAAAAAGCCCCTCCCATCTCCAGTCCACAAGAAGCTGCTTCCACCCAAGGTACTCATACACAAGAAGCCTCTTCCACCAAAAGTACTGAAACCCAATAAGCCATTCCCACCACCTTCGCCAGTTTACAAGAAGCCTTTTCCTCCATCTTTGCTTCCACCCCATGTCCCCATATACAAAAAGCCGCTTCTGCCTCCCACTCCAATCTACAATAAGCCAAATCCACCACCATTCTATAAATGGTCAATTCACAAGATAATACCACCAGTCTACAAACTTCTTCCTCCAATCCCTCCACTTTACAAGAAGCCATGTCCACCCATTCTTAAGCCTCCTCATTATCTTCCTAAGCTTCCTCCAAAGCACTTCCCCCTCCCCAATGATCAGTTGCTTGAATTTTCTATGTATAAACAATTTCAGATGAAAACTATGGAAAATAAGGACCCAAGCATTCATTTCATTTTCTGTTCTACTGGTTTGATTTTCTTTCCATGA 2001 45.78 MGSPPICGGTLLGFWVFLLFSVIFCYGSADQFEVVGVVECADCSESRIKASPAFSGLGVTIDCKLANGEFKTRAVGDVSNEGKFKVSLPEEMVKDGYQLKEECFAQLHSASAAPCPDAQSGLEASKIVLKAKTIGKKNVFGPIANLKFSSLTCTSALWWSFYKHPPLPKLPLPFPKAYPPPWKKFGHVYKKPLPPSIPIYKKPLPSPVHKKLLPPKVLIHKKPLPPKVLKPNKPFPPPSPVYKKPFPPSLLPPHVPIYKKPLLPPTPIYNKPNPPPFYKWSIHKPIPPVYKLLPPIPPLYKKPCPPILKPPHYLPKLPPKLFPFPNFCYGNADQVQVVGIVECADCSESHIKASQAFSGLGVTIDCKLANGEFKTRAFGVVSNEGKFKVSLPEEMVKDGYQLKEECFAQLHSASAAPCSDAQSGLKASKIVLKAKTIGKKNDFGPIENLKFSSLTCTSALWWSFYKHPPLPKLPLPFPKAYPPPWKKFGHVYKKPLPPSIPIYKKPLPSPVHKKLLPPKVLIHKKPLPPKVLKPNKPFPPPSPVYKKPFPPSLLPPHVPIYKKPLLPPTPIYNKPNPPPFYKWSIHKIIPPVYKLLPPIPPLYKKPCPPILKPPHYLPKLPPKHFPLPNDQLLEFSMYKQFQMKTMENKDPSIHFIFCSTGLIFFP* 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1298168 1302974 + Vvi3g117 Vvi3g117 783792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g117 666 PANTHER PROLINE-RICH PROTEIN 2 326 549 - -
Vvi3g117 666 PANTHER PROLINE-RICH PROTEIN 2 1 246 - -
Vvi3g117 666 Pfam Pollen protein Ole e 1 like 337 423 - -
Vvi3g117 666 Pfam Pollen protein Ole e 1 like 34 119 - -
Vvi3g117 666 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 326 549 - -
Vvi3g117 666 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 1 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g117 - - - vvi:100246920 403.675
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g117 . . . . . Bpe12g00110 Bma05g00415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00465 Csa07g00082 . . . Blo13g00524 . . . . . . . . . . . . . Cpe16g00299 Cpe05g01313 . . . . . . . Cla02g01128 Cam02g1203 Cec02g1206 Cco02g1256 Clacu02g1192 Cmu02g1154 Cre02g1464 . Csa02g01357 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001811 3 2 2 5 2 3 1 3 3 1 3 3 2 2 2 2 3 3 2 2 1 2 1 2 2 1 2 2 2 2 66