Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g12 ATGCCTCTTGACAGTGATGTCTTTCGTGTGCCTCTTGGTTATAATGCCCCTCAGCAGGTTCATATAACACAAGGAGATCATGAGGGGAGAGGAGTGATTGTCTCATGGGTCACTGTGGATGAACCAGGCTCAAACACAGTGCTCTACTGGAGTGAAAAGTCCAAGCGCAAGAACAGAGCTGAGGGAATCATGGTTACCTATAAATTCTACAATTACACGTCTGGTTACATTCATCATTGCACTATCAAGAATTTGGAGTTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAGTTTTGGTTTGTAACTCCTCCTAAAGTTGGCCCAGATGTTCCATACACTTTTGGTCTTATAGGGGATCTTGGGCAGAGTTATGATTCAAATATGACACTTACGCACTATGAATTGAACCCTGCGAAGGGAAAAACCGTGTTGTTTGTTGGAGACCTTTCATATGCTGATAGGTACCCGAACTATGATAACGTTAGGTGGGATACATGGGGAAGGTTCACTGAGAGAAGTACTGCTTATCAACCTTGGATATGGACTGCAGGAAACCATGAGATTGATTTTGCTCCTGAAATTGGTGAGTTTATACCCTTTAAGCCTTATAGTCATCGATATCATGTCCCCTACAGAGCATCAGATAGTACCGCTCCCTTCTGGTACTCTATCAAGAGGGCTTCAGCATATATCATTGTCTTATCATCATACTCAGCATATGGAAAATATACTCCTCAGTTTATGTGGCTTGAAAAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGCTAATTGTTCTTATGCATTCCCCATGGTATAACAGTTACAACTATCATTATATGGAAGGGGAAACCATGAGAGTAATGTACGAGCCATGGTTTGTGCAGTACAAAGTTGATGTTGTGTTTGCTGGTCATGTTCATGCCTACGAACGATCTGAACGTGTGTCCAACATTGCTTATAACGTCATAAATGGCATTTGCACTCCTGTAAATGACCAGTCTGCACCAGTATACATCACCATTGGAGATGGGGGAAATCTCGAAGGCCTGGCAACCAACATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACACCAAGAACCGAACCCATGCTCAGTATAGTTGGCACCGCAACCAAGATGGATATGCCGTGAAAGCTGATTCCTTATGGTTTTTCAACAGGTTCTGGCATCCAGAAGACGATTCCACAAGCACCCAGTCATGA 1281 43.64 MPLDSDVFRVPLGYNAPQQVHITQGDHEGRGVIVSWVTVDEPGSNTVLYWSEKSKRKNRAEGIMVTYKFYNYTSGYIHHCTIKNLEFNTKYYYVVGIGHTPRKFWFVTPPKVGPDVPYTFGLIGDLGQSYDSNMTLTHYELNPAKGKTVLFVGDLSYADRYPNYDNVRWDTWGRFTERSTAYQPWIWTAGNHEIDFAPEIGEFIPFKPYSHRYHVPYRASDSTAPFWYSIKRASAYIIVLSSYSAYGKYTPQFMWLEKELPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERVSNIAYNVINGICTPVNDQSAPVYITIGDGGNLEGLATNMTEPQPKYSAYREASFGHAIFDTKNRTHAQYSWHRNQDGYAVKADSLWFFNRFWHPEDDSTSTQS* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 205525 209603 - Vvi3g12 Vvi3g12 783687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g12 426 CDD MPP_PAPs 114 412 IPR041792 -
Vvi3g12 426 SUPERFAMILY Metallo-dependent phosphatases 114 420 IPR029052 -
Vvi3g12 426 Pfam Iron/zinc purple acid phosphatase-like protein C 343 402 IPR025733 -
Vvi3g12 426 Pfam Calcineurin-like phosphoesterase 119 317 IPR004843 GO:0016787
Vvi3g12 426 PANTHER PURPLE ACID PHOSPHATASE 1 424 - -
Vvi3g12 426 Gene3D - 16 112 - -
Vvi3g12 426 SUPERFAMILY Purple acid phosphatase, N-terminal domain 1 110 IPR008963 GO:0003993|GO:0046872
Vvi3g12 426 Pfam Purple acid Phosphatase, N-terminal domain 17 99 IPR015914 GO:0003993|GO:0046872
Vvi3g12 426 Gene3D - 113 422 IPR029052 -
Vvi3g12 426 PANTHER ACID PHOSPHATASE RELATED 1 424 IPR039331 GO:0003993
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g12 K22390 ACP7; acid phosphatase type 7 - vvi:100241752 919.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g12 Vvi18g1026 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g12 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97