Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g124 ATGGTAATGGCAATGGCGTTTAAGATGCTTTCTCTTTTGCTCCTCTGCGGATTCTTCTTTTCCAACTCCTTTGTCATCGAAGAAGCCAACATCCAGGACATCCAATGGGCATTCTCTCAAAACAAGCTCACCTCCAGACAGCTCGTTGACTTCTACCTGCACCAGATCGAGGCCCTGAATCCGGAGCTTCGCAGCGTGATAGAGGTGAACCCAGATGCACGAGAGCAAGCGGACAAGGCCGATGCAGAAATTAAAAGCAAGAAGGAGTTGGGGGAGTTGCATGGCATACCAGTGTTGCTGAAGGACAGTATAAATACTAAAGATAAATTGAATACAACTGCTGGGTCATATGCATTGTTGGGGGCGGAGGTGAGTGGAGATGCGGCGGTGGTGGAGAGGCTGAGGAAGGCGGGGGCGGTGATACTGGGAAAGGCTAGTATGAGTGAGTGGTATCAGTTTCGTTCTTTGAAAACTCGAAACGGCTGGTGTCCAAGGAGTGGACAGGGTGTGAATCCATATGTAGCATCGGGAGAGCCATGCGGGTCAAGCAGCGGATCTGCAGTATCTGTAGCGGCCAACATGGTGGCTGTCTCGCTTGGGACGGAGACTGATGGTTCCATCATCTGCCCAGCTGATGTGAACTCCGTTGTTGGGTTTAAACCCACTGTTGGACTCACCAGTCGGACAGGTGTCATCCCAATTTCACCCCGACAAGACAGTGTCGGACCTATATGCAGGAGTGTGTTGGACGCAGTTTATGTGCTTGATGCTATAGTGGGTTTTGATCCTAGAGACGGTGAGGCAACAAAAGAAGCATCCAAGTTCATACCTGTTGGTGGCTACAAACAATTTCTCAACAAAGATGGGATTGCAGGAAAGAGATTGGGTGTTGTGAGGAATCCATTTTCTGGATTTTACAACCGATCCACAGCTATTTCAGCCTTTGAGGCTCATCTCACCGTATTAAGGCAAAGAGGTGCAATTTTAGTGGACAATTTGGAAATAGAAAATGTTGATATCATATTGAACCCCTATGAAAGTGGTGAATCAACGGCCTTGTTGGCTGAGTTCAAGCTCAACATAAATGAATACCTGAAAGAGCTCACCCATTCTCCAGTGAGGTCCCTAGCAGGCATAATTGCCTTCAACTTGAACAACTCTGATCTGGAAAAGACTGATGAAAATGGCCAGGAAGTCTTTATCGCAGCAGAGATGACAAATGGGATTGGGAAGCAAGAGAGGATGGCAATGGAGATGATGGCAAATCTGTCTCGTGATGGGTTTGAGAAGCTGATGATGGAGAATGAGCTCGATGCAACGGTGACACTGGGTTCAGGCATGGCCACTGTACTGGCCATTGGAGGTTACCCCGGAGTTAGTGTTCCAGCTGGGTATGATGGAGATGGAATGCCCTTTGGCATATGTTTTGGAGGACTGAAGGGGATGGAGCCAAAGCTTATTGAAGTTGCTTACGGATTTGAACAAGCCACAAAGATTCGGAGACCTCCCGCTTCCCCTAAGAACTTATTGTTCAATACAATAATGTCCATCCATTCCCATGTCTCCACACTATTTCTCCTTCCTCTAGTCTTACTACAGTCTGGATCCATTGCCATCACAGGCCATGCATTTTCAATCGAAGAAGCAACTGTCCATGACTTCCATATGGCTTTCGAACAAAACAAACTCACCTCAAGGCAGCTGGTTGAGTTCTACCTGGGCAAGATTCACAAACTCAACCCAATTCTTCGTGGGGTAATAGAGGATAATATTGCAACCAAGGACAAGATGAACACAACAGCAGGATCATTTGCATTGCTTAAATCAGTGGTGCCAAGGGATGCAGGCGTGGTGAGGAAGTTGAGGAAGGCTGGAGCTATCATACTGGGAAAGGCTAGCCTCAGCGAGTGGGCTTATTTTCGTGCTACTGTTATTCCTTCGGGCTGGTGTGCTAGAACTGGCCAAGGTAAGAACCCTTATGTTCTATCAGCAACTCCCTGTGGCTCAAGTAGTGGATCAGCTATATCAGTAGCAGCAAATTTAGCGGCAGTGTCTCTAGGGACGGAGACTGATGGATCCATCTTATGTCCATCCCACGTTAATTCAGTAGTGGGCATCAAACCAACACTTGGTCTCACCAGCCGAGCTGGCGTGGTTCCAATCTCTCCTAGGCAGGACACTGTTGGGCCCATCTGCAGGACAGTCTCCGATGCTGTAGAGGTACTGGATGTCATTGTTGGTTTTGACTACAGGGATGAAGCAACCAGGACATCATCCAAGTACATACCACAAGGTGGCTATAAGCAATTTCTCAATGCAAATGGACTCAAGGGGAAGAGATTGGGGATAGTGAGGAATCCCTTCTATATGTTTGAGAATGGCTCTGTCCTGCCTCAAGTTTTTGAGCATCATTTCCACACACTAAGGCAAGGAGGTGCTATTTTGGTAGACCACCTGGAAATAGCCAACATTGATGTTATCTATGGCTCCTCCGGAGAAGGTGCAGCATTAGAGGCTGAGTTCAAAATATCCTTGAATGCTTACCTGAAAGAGCTGGTAGCATCCCCAGTAAGAACTTTGGCTGATGTGATAGCCTTCAACAACAAATTCTCACATTTGGAAAAGATCAAGGAGTATGGACAAGATACCTTTCTGCAGGCCGAAGCCACAAATGGGATAAACAAGAAAACTTTGTTAAAATTAGCAAGATTGTCACGAAATGGATTTGAGAAGTTGATGAAGGAGCATAAGCTGGATGCATTGGTGACTCCTGGTTCAAATGTGAGTCCTGTTCTTGCTATTGGAGGATTCCCTGGAATTTCTGTTCCAGCTGGATATGATAGCAAAGGAGTACCATTTGGCATTTGTTTTGGGGGCCTAAAGGGCTCTGAGCCAAAGCTAATCGAGATTGCATATAGCTTCGAGCAAGCAACTAAGATTAGGAAGCCACCTTCATTTAAACCTTGA 2967 46.71 MVMAMAFKMLSLLLLCGFFFSNSFVIEEANIQDIQWAFSQNKLTSRQLVDFYLHQIEALNPELRSVIEVNPDAREQADKADAEIKSKKELGELHGIPVLLKDSINTKDKLNTTAGSYALLGAEVSGDAAVVERLRKAGAVILGKASMSEWYQFRSLKTRNGWCPRSGQGVNPYVASGEPCGSSSGSAVSVAANMVAVSLGTETDGSIICPADVNSVVGFKPTVGLTSRTGVIPISPRQDSVGPICRSVLDAVYVLDAIVGFDPRDGEATKEASKFIPVGGYKQFLNKDGIAGKRLGVVRNPFSGFYNRSTAISAFEAHLTVLRQRGAILVDNLEIENVDIILNPYESGESTALLAEFKLNINEYLKELTHSPVRSLAGIIAFNLNNSDLEKTDENGQEVFIAAEMTNGIGKQERMAMEMMANLSRDGFEKLMMENELDATVTLGSGMATVLAIGGYPGVSVPAGYDGDGMPFGICFGGLKGMEPKLIEVAYGFEQATKIRRPPASPKNLLFNTIMSIHSHVSTLFLLPLVLLQSGSIAITGHAFSIEEATVHDFHMAFEQNKLTSRQLVEFYLGKIHKLNPILRGVIEDNIATKDKMNTTAGSFALLKSVVPRDAGVVRKLRKAGAIILGKASLSEWAYFRATVIPSGWCARTGQGKNPYVLSATPCGSSSGSAISVAANLAAVSLGTETDGSILCPSHVNSVVGIKPTLGLTSRAGVVPISPRQDTVGPICRTVSDAVEVLDVIVGFDYRDEATRTSSKYIPQGGYKQFLNANGLKGKRLGIVRNPFYMFENGSVLPQVFEHHFHTLRQGGAILVDHLEIANIDVIYGSSGEGAALEAEFKISLNAYLKELVASPVRTLADVIAFNNKFSHLEKIKEYGQDTFLQAEATNGINKKTLLKLARLSRNGFEKLMKEHKLDALVTPGSNVSPVLAIGGFPGISVPAGYDSKGVPFGICFGGLKGSEPKLIEIAYSFEQATKIRKPPSFKP* 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1383645 1391290 + Vvi3g124 Vvi3g124 783799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g124 988 Gene3D Amidase signature (AS) domain 19 504 IPR036928 -
Vvi3g124 988 Gene3D Amidase signature (AS) domain 533 986 IPR036928 -
Vvi3g124 988 Pfam Amidase 48 427 IPR023631 -
Vvi3g124 988 Pfam Amidase 587 930 IPR023631 -
Vvi3g124 988 SUPERFAMILY Amidase signature (AS) enzymes 545 985 IPR036928 -
Vvi3g124 988 PANTHER AMIDASE 587 988 - -
Vvi3g124 988 PANTHER AMIDASE 16 504 - -
Vvi3g124 988 PANTHER AMIDASE 530 590 - -
Vvi3g124 988 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 587 988 - -
Vvi3g124 988 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 530 590 - -
Vvi3g124 988 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 16 504 - -
Vvi3g124 988 SUPERFAMILY Amidase signature (AS) enzymes 28 503 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g124 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - vvi:100260628 979.933
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g124 Vvi7g1267 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1219 Cone8ag1272 . . Lsi10g00470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01185 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117