Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g129 ATGTACACTCCTGTGGATGAAGGGGTTTCCGCTTCAGGGACAGGAAGGTCACCTTCTGTAGAAGATTCTGCTATTGAAAAGAGTGAGATGGAGCAATGTGCCATAGAAGATTCTACTATTGAGAAGAGTGAGACAAAGCAAGGTGTCACATCTGAATTGGCAGCAGCCGATAATATAAGTCCTCAGCCGGAGCGTGCTGTGGAAAATGTAGCTGAAGTTAAAAACAAATATGTTGTGTTTGAGGAGCAGGAGACAAAAGAACCAAACATGGAGAAGGAGGATCAAAAAATTCAAGGGAATAGGGAACGAGAAATTCGTCCCGCAGAACAGGTTGCTTCATCATCTGGAAGATCTTCAAATCCTGGTCCTCCTCCTGCTCATCCTGCTGGCCTTGGGCGTGCTGCCCCGCTGTTGGAACCTGCTTCGCGTGTGGTGCAGCAGCCTCGAGTGAATGGAACCACATCCCAGGTACAAGCTCAACTCATTGAAGATGCTGGAAATGGGGAGGCTGAGGAAAATGATGAGACCCGTGAAAAACTCCAGATGATACGGGTGAAGTTTTTGCGGCTTGCTCATAGGCTTGGGCAGACTCCCCATAACGTTGTCGTGGCTCAAGTCTTGTACAGACTTGGATTGGCTGAACAGCTACGAGGGAGGAATGGGGGCCGTGTTGGTGCCTTCAGCTTTGACCGTGCTAGTGCCATGGCTGAGCAGCTTGAGGCAGCAGGGCAAGAGCCCCTCGATTTCTCTTGCACAATCATGGTTCTTGGAAAGACAGGAGTGGGTAAAAGTGCAACTATCAACTCAATATTTGATGAAGTGAAGTTTAGTACTGATGCTTTTCAGGTGGGTACAAAGAAGGTTCAGGATGTTGTGGGAACAGTTCAGGGAATTAAGGTAAGGGTCATTGACACTCCGGGCCTTCTACCATCCTGGTCAGACCAACGCCAGAATGAGAAGATCCTCCACTCTGTTAAAAGGTTTATCAAGAAAACCCCTCCAGATATTGTTCTGTATCTTGATAGGTTGGACATGCAGAGCAGGGATTTTGGTGACATGCCGCTGTTGCGCACAATAACTGAAATATTTGGACCATCAATATGGTTCAATGCAATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGCCCAAACGGTACTGCTTCAAGTTATGATATGTTTGTCACTCAGAGGTCTCATGTTGTCCAGCAAGCAATTCGTCAGGCAGCTGGGGATATGCGGCTCATGAACCCTGTGTCCTTGGTAGAGAACCACTCTGCATGCAGAACAAATAGGGCCGGGCAGAGAGTTTTACCAAATGCAAACACGCTTCTAAAGTTGCAAGATAGTCCACCTGGAAAGCCTTTTACAACACGATCAAGATCACCTCCTTTACCCTTCCTTCTCTCATCTCTTCTCCAATCAAGACCACAGGTAAGACTGCCAGAGGAGCAGAAAGAGCGACGGAAGATGATGAAGAAAATGGCAGCTTCTTCTAAGGATTTACCAAGTGACTACAGCGAGAACGCAGAAGAAGAAAGTGGTGGTGCTGCATCTGTGCCAGTTCCCATGCCAGATTGGGCCTTGCCTGCTTCTTTTGATTCTGATAATCCAACTCACCGTTATCGATATCTTGATTCATCCAACCAGTGGCTTGTGAGGCCTGTTCTGGAAACTCATGGTTGGGATCACGACGTTGGTTATGAAGGCATAAATGTGGAAAGAGTGTTTGCTATTAAGGACAAGATACCTGTTTCTTTTTCAGGCCAGGTTACAAAGGATAAAAAGGATGCCAATCTCCAAATGGAAATAGCCAGTTCAGTTAAGCATGGGGAAGGAAAAGCAACTTCTGTAGGTTTTGATATGCAGACGGTTGGAAAGGACATGGCATATACTCTGCGCAGTGAGACAAGATTTTGTAACTTTAGGAAAAATAAGGCAACAGCTGGTCTTTCTATTACTGCCCTGGGTGATGCCATAACAGCTGGATTAAAACTTGAAGACAAATTGATTGTTAACAAACGGATCCGGCTGGTTATGACTGGTGGTGCCATGACTGGCCGTGGTGATGTTGCTTATGGTGGTAGCTTGGAGGCCACCCTAAGAGATAAAGATCATCCTCTGGGTCGTTCGCTATCAACTCTTGGGCTCTCCATCATGGATTGGCATGGAGATCTTGCTATTGGATGCAACATACAGTCCCAGATCCCTATTGGCAGGTTTACAAACATGATTGGTCGTGTCAATTTGAATAATAGGGGAGCGGGGCAGGTCAGCATACGCTTGAATAGCTCAGAACAGCTTCAAATAGCTTTAATTGGTCTGGTTCCTCTACTCCGGAAGCTACTTGGTTATTCTCAACAAGGACAATCATCCTGTTTCCTTATTGTCTATGCTTTTGGGATGAACTGCAAAATTCCTGGTATGTATCAAAAGGGGTTGTCCTTTTTCCTATATTTGTACTCATGGATTACTTCTGCAGGGGCTAATGAAACTTTGGGCTCGATGCTCTTGGGCTATGTAAATATCTGCAATACTTACGAAAGTTTCTCTTGA 2562 45.94 MYTPVDEGVSASGTGRSPSVEDSAIEKSEMEQCAIEDSTIEKSETKQGVTSELAAADNISPQPERAVENVAEVKNKYVVFEEQETKEPNMEKEDQKIQGNREREIRPAEQVASSSGRSSNPGPPPAHPAGLGRAAPLLEPASRVVQQPRVNGTTSQVQAQLIEDAGNGEAEENDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQVGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRQNEKILHSVKRFIKKTPPDIVLYLDRLDMQSRDFGDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNANTLLKLQDSPPGKPFTTRSRSPPLPFLLSSLLQSRPQVRLPEEQKERRKMMKKMAASSKDLPSDYSENAEEESGGAASVPVPMPDWALPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDVGYEGINVERVFAIKDKIPVSFSGQVTKDKKDANLQMEIASSVKHGEGKATSVGFDMQTVGKDMAYTLRSETRFCNFRKNKATAGLSITALGDAITAGLKLEDKLIVNKRIRLVMTGGAMTGRGDVAYGGSLEATLRDKDHPLGRSLSTLGLSIMDWHGDLAIGCNIQSQIPIGRFTNMIGRVNLNNRGAGQVSIRLNSSEQLQIALIGLVPLLRKLLGYSQQGQSSCFLIVYAFGMNCKIPGMYQKGLSFFLYLYSWITSAGANETLGSMLLGYVNICNTYESFS* 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1424546 1429397 - Vvi3g129 Vvi3g129 783804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g129 853 MobiDBLite consensus disorder prediction 1 67 - -
Vvi3g129 853 MobiDBLite consensus disorder prediction 80 133 - -
Vvi3g129 853 Pfam Translocase of chloroplast 159/132, membrane anchor domain 522 785 IPR024283 -
Vvi3g129 853 ProSiteProfiles AIG1-type G domain profile. 248 467 IPR006703 GO:0005525
Vvi3g129 853 MobiDBLite consensus disorder prediction 80 108 - -
Vvi3g129 853 MobiDBLite consensus disorder prediction 482 498 - -
Vvi3g129 853 CDD Toc34_like 223 442 - -
Vvi3g129 853 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 79 487 IPR045058 -
Vvi3g129 853 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 486 790 IPR045058 -
Vvi3g129 853 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 486 790 - -
Vvi3g129 853 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 79 487 - -
Vvi3g129 853 MobiDBLite consensus disorder prediction 22 43 - -
Vvi3g129 853 Pfam AIG1 family 251 384 IPR006703 GO:0005525
Vvi3g129 853 MobiDBLite consensus disorder prediction 478 525 - -
Vvi3g129 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 384 IPR027417 -
Vvi3g129 853 Gene3D - 219 451 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g129 - - - vvi:100262391 877.085
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39