Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g130 ATGCCCTCTCTCTCCTCTCCAAATCTCAATTTCTCACCGTTCCGTACAAATCCCAGGAAGCCCAGACGCCGTCCCTGTCTCGTAGAAGCCATCGTCAAGCTCTGCAAGAAAAACAAGCTAAACGAAGCCGTTTCGTCTCTGGAAAACCTCGCACGGCGAGGCCTGCGCCTCGATTCTCGAACACTTGCGTCCCTCTTGCAACACTGCGCGGATTCCAGGGCTCTCAGAGAAGGCAAAAGGGTCCACCTCCATTTGAAGCTTACGGGTCTGAAGAGGCCCGGTACATTTTTATCTAATCATTTAATTAATATGTATGCGAAATGTGGCAAAGAGGTTGAAGCTCGTAAAGTGTTTGATAAAATGTCTGCTAGAAATCTGTATTCTTGGAACAATATGCTTTCTGGGTATGCTAAATTGGGAATGATAAAGCCAGCTAGGAAGTTGTTTGACAAAATGCCTGAGAAGGATGTTGTGTCATGGAATACTATGGTAATCGCCCATGCTCAGTGTGGTTATTGGGATGAAGCATTGAGGTTTTACAGTGAGTTTCGGCAGTTGGGTATTCAGTGTAACGGGTTTAGTTTCGCTGGCGTCTTGACTGTTTGTGTAAAGTTGAAGGAAGTAGGGCTTACTAGGCAGGTTCATGGGCAGATTCTGGTAGCTGGGTTTTTGTCTAATGTTGTGCTTTCAAGCTCAGTTCTCGATGCTTATGTGAAATGCGGGTTGATGGGTGATGCGAGGAAGTTGTTTGATGAGATGTCTGCTAGAGACGTTCTTGCATGGACTACCATGGTTTCAGGATATGCCAAATGGGGTGATATGAAATCAGCTAATGAATTATTTGTTGAGATGCCTGAGAAGAATCCAGTCTCATGGACTGCTTTGATTTCTGGGTATGCCAGAAATGGTATGGGGCACAAGGCCCTTGAATTGTTCACAAAGATGATGCTGTTTCATGTTAGACCTGATCAATTCACGTTCAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCACTTAAGCATGGTAAACAAATTCATGCCTATTTGTTACGAATTAATTTCCAACCTAATACCATAGTTGTTAGCGCACTCATCGACATGTACTCAAAATGTGGAAGCTTGGGAATTGGAAGGAAGGTTTTTGATCTTATGGGTAATAAGCTAGATGTTGTATTGTGGAACACGATTATATCTGCTTTGGCACAGCATGGTTGTGGAGAAGAGGCAATACAGATGCTTGATGACATGGTAAGATCAGGAGCAAAGCCAGATAAAATTACCTTTGTCGTCATTCTTAATGCATGTAGTCATTCAGGCCTTGTGCAGCAAGGGCTTAATTTCTTTGAGTCCATGTCTTGTGATTATGGCATTGTTCCCAGTCAGGAACATTATGCATGCTTAATTGATCTGTTGGGTCGAGCTGGATGTTTTGAGGAGGTAATGGACCAGCTTGAGAAGATGCCTTATAAGCCTGATGATCGTGTTTGGAATGCCTTACTAGGTGTTTGTAGGATTCATGGACATATAGAAAGGTTAGACAGCTTATGA 1551 43.33 MPSLSSPNLNFSPFRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIERLDSL* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1436851 1438669 + Vvi3g130 Vvi3g130 783805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g130 516 Gene3D Tetratricopeptide repeat domain 437 516 IPR011990 GO:0005515
Vvi3g130 516 Gene3D Tetratricopeptide repeat domain 198 286 IPR011990 GO:0005515
Vvi3g130 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Vvi3g130 516 MobiDBLite consensus disorder prediction 1 15 - -
Vvi3g130 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Vvi3g130 516 TIGRFAM PPR: pentatricopeptide repeat domain 99 126 IPR002885 -
Vvi3g130 516 TIGRFAM PPR: pentatricopeptide repeat domain 127 158 IPR002885 -
Vvi3g130 516 TIGRFAM PPR: pentatricopeptide repeat domain 158 191 IPR002885 -
Vvi3g130 516 TIGRFAM PPR: pentatricopeptide repeat domain 392 425 IPR002885 -
Vvi3g130 516 TIGRFAM PPR: pentatricopeptide repeat domain 232 258 IPR002885 -
Vvi3g130 516 TIGRFAM PPR: pentatricopeptide repeat domain 260 287 IPR002885 -
Vvi3g130 516 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Vvi3g130 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Vvi3g130 516 Gene3D Tetratricopeptide repeat domain 296 436 IPR011990 GO:0005515
Vvi3g130 516 Gene3D Tetratricopeptide repeat domain 26 179 IPR011990 GO:0005515
Vvi3g130 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 256 IPR002885 -
Vvi3g130 516 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g130 516 Pfam PPR repeat family 390 437 IPR002885 -
Vvi3g130 516 Pfam PPR repeat family 287 335 IPR002885 -
Vvi3g130 516 SUPERFAMILY TPR-like 30 281 IPR011990 GO:0005515
Vvi3g130 516 PANTHER - 132 285 - -
Vvi3g130 516 PANTHER - 31 141 - -
Vvi3g130 516 PANTHER - 268 512 - -
Vvi3g130 516 Pfam PPR repeat 465 489 IPR002885 -
Vvi3g130 516 Pfam PPR repeat 362 385 IPR002885 -
Vvi3g130 516 Pfam PPR repeat 158 188 IPR002885 -
Vvi3g130 516 Pfam PPR repeat 127 156 IPR002885 -
Vvi3g130 516 Pfam PPR repeat 99 125 IPR002885 -
Vvi3g130 516 Pfam PPR repeat 231 256 IPR002885 -
Vvi3g130 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 287 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g130 - - - vvi:100252156 1022.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g130 . . . . . Bpe12g00113 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1222 Cone8ag1274 . . . . . . . Blo13g00520 Bda15g01042 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008158 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33