Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g133 ATGGCCTCAAGCACCCACCGTCACTTCCCCATTCTCTGTGATTTCATCCACCCATTGCCCATTTCTTGGTTCTTCATAAGATTTTGTCCACCTCTACATTCAGCTCCGGTAACTGAACTGATCATACTACTGATAATTTTTGTGGGGCTATTCATGGCTTCGTCTTCATCGCTTTATGAGGTTCTTGGGATTCCGGTGAGCGCCTCCGGGAACGAGATAAAGGCGGCGTACCGGAGGCTGGCGAGAGTGTGCCATCCGGATGTTGTAGCGATGAACCAGAAGGAGACTTCAGCTAACGAGTTTATGAAGATACATGCAGCCTACTCCACCTTGTCGGACCCTGATAAGCGAGCAAATTATGACCAGGATCTTTTCAGGCGGCGCCGGCCGCACTTGATTAATCAGAGTGGTTACAATACTCGATAA 426 49.06 MASSTHRHFPILCDFIHPLPISWFFIRFCPPLHSAPVTELIILLIIFVGLFMASSSSLYEVLGIPVSASGNEIKAAYRRLARVCHPDVVAMNQKETSANEFMKIHAAYSTLSDPDKRANYDQDLFRRRRPHLINQSGYNTR* 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1449295 1450092 + Vvi3g133 Vvi3g133 783808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g133 141 Gene3D DnaJ domain 46 139 IPR036869 -
Vvi3g133 141 PRINTS DnaJ domain signature 59 77 IPR001623 -
Vvi3g133 141 PRINTS DnaJ domain signature 96 116 IPR001623 -
Vvi3g133 141 PRINTS DnaJ domain signature 77 92 IPR001623 -
Vvi3g133 141 ProSitePatterns Nt-dnaJ domain signature. 101 120 IPR018253 -
Vvi3g133 141 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 52 131 - -
Vvi3g133 141 ProSiteProfiles dnaJ domain profile. 57 124 IPR001623 -
Vvi3g133 141 PANTHER - 52 131 - -
Vvi3g133 141 CDD DnaJ 59 113 IPR001623 -
Vvi3g133 141 SUPERFAMILY Chaperone J-domain 43 124 IPR036869 -
Vvi3g133 141 Pfam DnaJ domain 58 121 IPR001623 -
Vvi3g133 141 SMART dnaj_3 56 116 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g133 - - - vvi:100241895 260.766
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66