Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g134 ATGGCGGACATAGTTAAGCAAATCTTGACGAGGCCGATACAATTGGCAGAGCAGGTGTCTAAGGCGGCAGAAGGGGCCAACTCGTTTAAACAGGATTGCTTGGAGCTTAAGTCCAAGACCGATAAGTTGGCGGCGCTTGCGCTGGTGATAAAGTGTCGTGCCAATGGCCTCATGAAGCGGGTGTTCACCATCATTCCTGCAGCTGCATTCCGGAAAACATCACTGCAGCTGGAGAATTCGATTGGTGACGTGTCCTGGCTGCTCCGCGTGTCGGCATCTGCCGATGATCGCGATGATGAGTACCTGGGTCTCCCTCCAATCGCTGCCAATGAGCCCATTCTATGCCTGATATGGGAACAGATTGCTATTCTTCACACGGGTTCACTTGAGGATAGGTCTGATGCTGCTGTGTCTCTGGTCTCCTTGGCCCGCGACAATGATCGGTATGGAAAGCTCATTATTGAGGAAGGAGGGGTTCCACCCCTTCTAAAACTGGCCAAGGAGGGAAAGATGGAAGGTCAGGAGAGTGCTGCAAAGGCTCTTGGTCTTCTAGGACGCGACCCGGAAAGCGTAGAACACATTGTGAATGCAGGTGTGTGCTCAGTGTTTGCGAAAATCCTCAAAGAAGGTAGGATGAAGGTTCAGGCGGTGGTGGCTTGGGCTGTCTCAGAATTGGCTGCCCATCACCCCAAATGCCAGGATCACTTCGCACAAAACAATATAATCCGGTTGCTTGTTAGCCATCTAGCATTCGAGACTGTTCAAGAACACAGCAAATATGCCATTGCCAGCAAACAGACGATGTCGATTCATTCAGTTATGCAAAATGTGGTTACTAACACCATGGCAATGAGATCACAACCCGAAGATCCAGCCACCAAGGCTGAAATGAAGGCAATGGCAGCAAGAGCCCTGTGGCACCTCTGTGAGGGAAATGCCCCTATATGCCATATAATCACTGAATCAAAAGCACTTCTATGCTTTGCAGTTTTACTAGAGAAGGGCCATGATGATGTTCAGTTCAATTCAGCCATGGCATTGATGGAAATCACAGCAGTTGCTGAGCAAAACTCTGACCTGAGGCGCTCTGCCTTCAAGCCCACCTCCCCAGCTGCAAGAGCTGTGGTTGAGCAGCTACTAAAAATAATTGAAAAGGCAGACTCGGATCTTCTCATCCCCTGCATCAAATCCGTTGGGAATTTGGCCAGGACTTTCAGGGCAACTGAAACCAGAATCATTGGACCATTAGTGAGACTTCTGGACGAAAGAGAACCAGAGGTTTCAAAGGAGGCAGCCATTGCACTCATTAAGTTTGCCAGCACTGAGAATTATCTCCACCTCAATCACTCCAAAGCAATCATACAAGCAGCTGGGATTAAGCATCTGATTCAGCTGGTCTACTTTGGGGAACAAATGGTTCAGTTTCCTGCACTGATCCTCCTATGCTATGTTGCCATGCATGTCCCTGACAGTGAGGTACTGGCAGAGGAAAAGATCCGAATAGTTCTGGAGTGGGCATCAAAGCAGGGGAGTATGATGCAGGATCCAGAGATTGAGACACTGATAAACGAAGCCAAAAGCAGGCTCGAACTCTATCAAGCCAGCTCTTCAAGAGGACACCCCTGA 1626 49.2 MADIVKQILTRPIQLAEQVSKAAEGANSFKQDCLELKSKTDKLAALALVIKCRANGLMKRVFTIIPAAAFRKTSLQLENSIGDVSWLLRVSASADDRDDEYLGLPPIAANEPILCLIWEQIAILHTGSLEDRSDAAVSLVSLARDNDRYGKLIIEEGGVPPLLKLAKEGKMEGQESAAKALGLLGRDPESVEHIVNAGVCSVFAKILKEGRMKVQAVVAWAVSELAAHHPKCQDHFAQNNIIRLLVSHLAFETVQEHSKYAIASKQTMSIHSVMQNVVTNTMAMRSQPEDPATKAEMKAMAARALWHLCEGNAPICHIITESKALLCFAVLLEKGHDDVQFNSAMALMEITAVAEQNSDLRRSAFKPTSPAARAVVEQLLKIIEKADSDLLIPCIKSVGNLARTFRATETRIIGPLVRLLDEREPEVSKEAAIALIKFASTENYLHLNHSKAIIQAAGIKHLIQLVYFGEQMVQFPALILLCYVAMHVPDSEVLAEEKIRIVLEWASKQGSMMQDPEIETLINEAKSRLELYQASSSRGHP* 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1459599 1461579 + Vvi3g134 Vvi3g134 783809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g134 541 SUPERFAMILY ARM repeat 121 506 IPR016024 -
Vvi3g134 541 Gene3D - 119 278 IPR011989 -
Vvi3g134 541 PANTHER ARMADILLO REPEAT ONLY 4 45 277 - -
Vvi3g134 541 PANTHER ARMADILLO REPEAT ONLY 4 286 540 - -
Vvi3g134 541 PANTHER ARMADILLO REPEAT ONLY 4 1 46 - -
Vvi3g134 541 Gene3D - 290 517 IPR011989 -
Vvi3g134 541 PANTHER ARMADILLO REPEAT ONLY 1 45 277 - -
Vvi3g134 541 PANTHER ARMADILLO REPEAT ONLY 1 286 540 - -
Vvi3g134 541 PANTHER ARMADILLO REPEAT ONLY 1 1 46 - -
Vvi3g134 541 SMART arm_5 187 227 IPR000225 GO:0005515
Vvi3g134 541 SMART arm_5 145 186 IPR000225 GO:0005515
Vvi3g134 541 SMART arm_5 312 352 IPR000225 GO:0005515
Vvi3g134 541 SMART arm_5 446 486 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g134 - - - vvi:100264182 981.089
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g134 Vvi4g1117 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g134 . . . . . . . . . . Cma02g00321 . Car02g00202 Car20g00666 . . . . . . . . . . . . . . . . . . . . . Lsi10g00476 . Chy11g00278 . . . . . . . . . Sed01g0209 Cmo02g00315 . . . . . Cpe16g00305 Cpe05g01320 Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . Cla02g01149 Cam02g1226 Cec02g1233 Cco02g1275 Clacu02g1206 Cmu02g1175 Cre02g1484 . Csa02g01370 . Cme11g00398
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008024 0 1 2 1 2 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36