Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g138 ATGGATCGTCCCGTCATCTTTGTTGCCACCATTCTGGCCCTCCTCTGTGTCTCAGAAGTTGATTCAGCAACGTTCAGACTCGTCAACAAGTGCCGCCACACAATCTGGCCGGGATTTTTGTCTGGCGCCAACACGGCGCCCCTCGCTTCCACAGGCTTTGTTCTCAAGAGTGGCAAATCCAGGACCATCTCGGTGCCCAGATCATGGTCCGGTCGGATGTGGGGTCGAACCCTTTGTGCCGAAGACGATTCCGGGAAGTTTTCTTGCGCCACCGCCGATTGTGGCTCCGGGAAGGTGGAGTGCGATGGAGGCAACGCCGAACCGCCGGCGACTTTGGCGGAGTTCACGTTGAACGGCGACCAAGGTTTGGACTTTTACGACGTGAGCTTGGTTGATGGGTACAATCTCCCCATGCTGGTGGTGGCAAGGGGTGGCCACGGCGGTGACTGCAGCGCCACCGGGTGTCTCGTCGACCTGAACGGCGCGTGCCCGAAGGAGCTGAGGGTGGTGGCTTCGGCGACGAACGGCAGCCGCGGCGCGAGTGTCGCGTGTAAAAGCGCGTGTGAGGCTTTCGGAGATCCGATGTATTGCTGCAGTCAGGCTTATTCTACGCCCGACACATGTCAACCATCAGTGTACTCTCAGTTCTTTAAACATGCTTGCCCACGCTCCTATAGCTACGCGTATGATGATAAGACGAGCACCTTCACTTGTGCCTCTGCAGATTACATTATCATCTTTTGTCCATCCCCTTTCACCAGCCAAAAAGTGTTGGCGTTGCGGAGAGAAGCAGCAGAGCTGCCACTAGTGAACAAAACCATGATGTACATAGGAAGAAAATATGCGAGTGGCACTTCATCCCCAGGTCGGGTTCAAGAGCAAATCATAGCTCATGGTGCCTCCATTGTGGTGTCGCTATTGCTCCTCTTGCTATTTTTGTAA 942 55.1 MDRPVIFVATILALLCVSEVDSATFRLVNKCRHTIWPGFLSGANTAPLASTGFVLKSGKSRTISVPRSWSGRMWGRTLCAEDDSGKFSCATADCGSGKVECDGGNAEPPATLAEFTLNGDQGLDFYDVSLVDGYNLPMLVVARGGHGGDCSATGCLVDLNGACPKELRVVASATNGSRGASVACKSACEAFGDPMYCCSQAYSTPDTCQPSVYSQFFKHACPRSYSYAYDDKTSTFTCASADYIIIFCPSPFTSQKVLALRREAAELPLVNKTMMYIGRKYASGTSSPGRVQEQIIAHGASIVVSLLLLLLFL* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1484206 1486257 + Vvi3g138 Vvi3g138 783813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g138 313 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Vvi3g138 313 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vvi3g138 313 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vvi3g138 313 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Vvi3g138 313 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Vvi3g138 313 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 10 260 - -
Vvi3g138 313 SUPERFAMILY Osmotin, thaumatin-like protein 23 250 IPR037176 -
Vvi3g138 313 Pfam Thaumatin family 29 249 IPR001938 -
Vvi3g138 313 SMART tha2 25 249 IPR001938 -
Vvi3g138 313 PANTHER OS03G0233200 PROTEIN 10 260 IPR001938 -
Vvi3g138 313 ProSiteProfiles Thaumatin family profile. 22 249 IPR001938 -
Vvi3g138 313 CDD TLP-PA 24 248 - -
Vvi3g138 313 Gene3D Thaumatin 23 249 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g138 Vvi4g1121 ECH
Vvi3g138 Vvi18g1130 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g138 - - vvi:100232855 622.083