Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g139 ATGGGTCGTCTCTCTTGCTGCTCTTCCATTTTCATCTTGAACATCTCACTCATGGCCTTTTCCACTGGTGTTTTGGGTGCTACATTCACGTTTGTGAACAGGTGCGAGTACACTGTGTGGCCGGGAATTCTCGCAAATGCCGGCAGTGCCAGGCTCGACAGCACTGGCTTCGAGCTACCAAAGGACACTTCCCGTTCGTTTCTGGCTCCGACAGGTTGGTCCGGTAGGTTCTGGGGGCGAACAGGGTGCAACTTTGACGGATCTGGGTTGGGTTCTTGCGTCACTGGCGACTGTGGGTCGGGGACCATCGAATGCAACGGCGCCGGTGCTGCCCCGCCGGCGACACTGGCGGAGTTCACTCTCGGTACCGGCGGGCAGGACTTCTACGACGTGAGCCTCGTCGATGGCTACAACCTGCCGATGATAGTGGAAGGGAGTGGTGGGTCGGGAATGTGCGCGTCGACGGGCTGCACGGTGGATCTCAACCAGGGCTGTCCGGCGGAACTGAAGGTCGGAGACGGCAGCGCGTGCAGGAGCGCGTGCGAAGCGTTTGGGAGCCCGGAGTACTGTTGCAGCGGCGCGTACAGTACGCCCGCCACCTGCCGGCCGTCGGTGTACTCGGAGATGTTCAAGTCCGCTTGCCCCAGATCCTACAGCTATGCCTATGATGATGCCACCAGTACCTTCACATGTGCCGGCGCTGATTATACGGTGACGTTTTGCCCCTCATCTCCAAGTCAGAAATCTTCAAGAGAGTCTTCACCAACGACCACAGGTACTCCAACAGATGAGCCGGGAGTATCAGGGTCCGGAACCTATGAGCAAGGAGTATCAGGGTCCGGAACCTATGAGCCAGGGGCATCAGGGTCCGGAACAATGGGATCAATGACAATCGGCTCAGGGTCAGGCTCAGACTCTGGAGCAATGCTGGCAGATGGGTCATGGTTAGCTGGTTTAGCCATGGGAGACTCAGCCAGGGCTCACTCTCCATCATCATTCGCTGCCTCTTTAGCTCTCTCTTTCCTCCTCTTCTCCTTTGTTTACTTGTAG 1050 57.62 MGRLSCCSSIFILNISLMAFSTGVLGATFTFVNRCEYTVWPGILANAGSARLDSTGFELPKDTSRSFLAPTGWSGRFWGRTGCNFDGSGLGSCVTGDCGSGTIECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGSGGSGMCASTGCTVDLNQGCPAELKVGDGSACRSACEAFGSPEYCCSGAYSTPATCRPSVYSEMFKSACPRSYSYAYDDATSTFTCAGADYTVTFCPSSPSQKSSRESSPTTTGTPTDEPGVSGSGTYEQGVSGSGTYEPGASGSGTMGSMTIGSGSGSDSGAMLADGSWLAGLAMGDSARAHSPSSFAASLALSFLLFSFVYL* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1492907 1494948 + Vvi3g139 Vvi3g139 783814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g139 349 Pfam Thaumatin family 33 242 IPR001938 -
Vvi3g139 349 MobiDBLite consensus disorder prediction 242 298 - -
Vvi3g139 349 Gene3D Thaumatin 27 242 IPR037176 -
Vvi3g139 349 ProSiteProfiles Thaumatin family profile. 26 242 IPR001938 -
Vvi3g139 349 ProSitePatterns Thaumatin family signature. 89 105 IPR017949 -
Vvi3g139 349 PANTHER OS03G0233200 PROTEIN 9 253 IPR001938 -
Vvi3g139 349 SUPERFAMILY Osmotin, thaumatin-like protein 27 243 IPR037176 -
Vvi3g139 349 SMART tha2 29 242 IPR001938 -
Vvi3g139 349 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 9 253 - -
Vvi3g139 349 CDD TLP-PA 28 241 - -
Vvi3g139 349 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Vvi3g139 349 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Vvi3g139 349 PRINTS Pathogenesis-related protein signature 89 118 IPR001938 -
Vvi3g139 349 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Vvi3g139 349 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g139 - - - vvi:100265907 625.165
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g139 Vvi18g1131 ECH
Vvi3g139 Vvi4g1122 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g139 . Blo15g00372 . . . . . . . . . Cma20g00763 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00480 . Chy11g00274 . . . . . . . . . Sed05g3597 . Cmo20g00760 . . . . Cpe16g00307 . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . Cla02g01153 Cam02g1229 Cec02g1238 Cco02g1278 Clacu02g1210 Cmu02g1179 Cre02g1488 . Csa02g01374 . Cme11g00395
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116