Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g141 ATGGGCTTCCACCTATCTCCAGCGTCCTCCTCCAGAAAATGGCTGGGGTTTGTGACGGCCGTTTGGGTTCAGTCCATCTCCGGCAACAACTACACTTTTTCCAACTACTCAGATGCTCTCAAATCGTTAATGGCTCTCACCCAGTTGCAACTCAACAACCTCTCTGTTGCCAAGGATGTGGGCAAGGCGTTTGGCCTCCTCTCCGGTCTCGCCTCCGACCGGTTGTCCACTCCGATGATGCTTCTTATTGGGTCGATTGAAGGGCTTGTCGGGTATGGGGTTCAATGGCTGGTCGTCAGCCGGAAAATCCAGCCGCTTCCCTATTGGCAGATGTGTATATTTCTATGCATGGGAGGCAACAGTACGACATGGATGAACACGGCGGTTCTGGTGACATGCATCCGAAACTTCCGGACGAATCGAGGTCCGGTCTCCGGAATATTGAAGGGTTACGTGGGTCTGAGCACCGCCATTTTCACTGACCTCTGCACTGCTCTCTTTGCCGACGACCCCGCCATCTTCCTCCTCATGCTCGCCATCATCCCCCTTCTTGTCTGCCTCTCCGCTATTCTCTTCCTCCGCGAGGTCCCTTCGTCGTCCACCGCAGCCGGCGAGAAGGAAGAGACCAAATTCTTCAACCTCTTCAACATCGTCGCCGTCGTCCTCGCCGTCTATCTCCTCACCTTCGACGTCACCGGCTCCCATAGCCGCATCCTCTCTCAGGCATTCGCCGTCGTCCTGCTCTTCCTCCTGGCTTGCCCTCTCTCAATCCCTCTCTATTTCATGCTACAGGATTTTAACCGGTCCGGTTCAAAACCCAGTTCCGACATCGAGGGTCTAATCACCGAAACCCTCCTGAGTCAAAACAGTCAGCCGGAAATGGCGGCTCCGGCATCGGAGGAAAAGGTGGAGCCTGTGGTGGAAATCAAACGACCCCGGCCGTCAATTGGGGAGGATCACACAATTATTGAAGCAATCAGCACCACTGATTTCTGGATACTCTTTGCATCCTTCCTCTGTGGAGTTGGCACTGGTTTGGCTGTTATGAATAACATGGGACAAATGGGTCTAGCTCTCGGCTACGTGGATGTCTCCATTTTCGTCTCCCTCACAAGCATTTGGGGATTTTTCGGCCGAATTTTATCCGGTTCAGTTTCAGAATACTTCATAGGAAAAGCTGGAACACCAAGACCTTTCTGGAATGCAGCTTCTCAGATTCTGATGGCAGTTGGGTATGTTGTGATGGCCATGGCTTTGCCTGGCTCACTATACATTGGTTCAGTCGTGGTAGGGATTTGCTATGGAGTTCGTCTCGCTGTCACAGTCCCCATTGCTTCTGAACTGTTTGGCCTGAAATATTATGGTCTCATCTACAACATTCTAATCCTCAACCTCCCCCTTGGCTCCTTCCTCTTCTCCGGCCTGCTTGCTGGCTTGTTGTATGACGCCCATGCTACCCGCACAGCAGGAGGTGGCACCACATGCATAGGCCCCCACTGTTACAGGCTGGTGTTCGTGGTAATGGCCTTATCATGCATTATCGGGTTTGGCTTAGACGTCCTACTGGCAATTAGAACAAAGAATGTTTACTCCAAGATTCGCGCGAGCAAGAGATCAAAGAAGCCAGCGGCCCCATCCAACAGCCGATAA 1650 52.42 MGFHLSPASSSRKWLGFVTAVWVQSISGNNYTFSNYSDALKSLMALTQLQLNNLSVAKDVGKAFGLLSGLASDRLSTPMMLLIGSIEGLVGYGVQWLVVSRKIQPLPYWQMCIFLCMGGNSTTWMNTAVLVTCIRNFRTNRGPVSGILKGYVGLSTAIFTDLCTALFADDPAIFLLMLAIIPLLVCLSAILFLREVPSSSTAAGEKEETKFFNLFNIVAVVLAVYLLTFDVTGSHSRILSQAFAVVLLFLLACPLSIPLYFMLQDFNRSGSKPSSDIEGLITETLLSQNSQPEMAAPASEEKVEPVVEIKRPRPSIGEDHTIIEAISTTDFWILFASFLCGVGTGLAVMNNMGQMGLALGYVDVSIFVSLTSIWGFFGRILSGSVSEYFIGKAGTPRPFWNAASQILMAVGYVVMAMALPGSLYIGSVVVGICYGVRLAVTVPIASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGLLYDAHATRTAGGGTTCIGPHCYRLVFVVMALSCIIGFGLDVLLAIRTKNVYSKIRASKRSKKPAAPSNSR* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1502132 1506352 - Vvi3g141 Vvi3g141 783816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g141 549 Gene3D MFS general substrate transporter like domains 10 206 IPR036259 -
Vvi3g141 549 Pfam Nodulin-like 13 258 IPR010658 -
Vvi3g141 549 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 5 541 - -
Vvi3g141 549 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 5 541 - -
Vvi3g141 549 SUPERFAMILY MFS general substrate transporter 63 529 IPR036259 -
Vvi3g141 549 CDD MFS_Mch1p_like 13 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g141 - - - vvi:100260696 1029.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g141 . Blo15g00373 Bda06g00482 . Bpe07g00721 . . Bma12g00928 . Cmo11g01732 Cma02g00243 Cma20g00761 . Car20g00663 . Cpe04g00583 . Bhi05g01728 . . . Hepe02g0432 . . Cla02g00435 Cam02g0444 Cec02g0442 Cco02g0460 Clacu02g0446 Cmu02g0440 Cre02g0774 . . . . Lsi10g00482 Csa07g00091 Chy11g00271 Cme01g01273 . . . . . . . . . Cmo02g00245 Cmo20g00758 . . . . Cpe16g00309 Cpe05g01382 Bhi10g01865 Tan05g1158 . . Hepe10g1374 . . Cla02g01155 Cam02g1231 Cec02g1240 Cco02g1280 Clacu02g1212 Cmu02g1181 Cre02g1490 Lsi11g01194 Csa02g01375 Chy01g00687 Cme11g00393
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g95 . 1 771 Nodulin-like Gene Family AT4G19180 61.4 2.2e-261 898.7
Vvi2g970 . 4 232 Nodulin-like Gene Family AT3G45870 71.9 9.4e-96 347.1
Vvi14g1392 ECH 1 344 Nodulin-like Gene Family AT3G28050 59.7 3.5e-114 408.7
Vvi14g1392 ECH 1 344 Nodulin-like Gene Family AT5G40230 55.0 4.4e-93 338.6
Vvi14g1391 ECH 1 319 Nodulin-like Gene Family AT5G40230 56.5 1.4e-91 333.6
Vvi14g1392 ECH 1 329 Nodulin-like Gene Family AT5G40240 55.4 2.2e-92 336.3
Vvi14g1391 ECH 1 339 Nodulin-like Gene Family AT5G40240 54.4 2.3e-89 326.2
Vvi4g1060 ECH 4 259 Nodulin-like Gene Family AT3G53210 60.9 8.0e-89 323.9
Vvi18g1028 ECH 1 244 Nodulin-like Gene Family AT3G53210 61.9 2.5e-82 302.4
Vvi8g620 ECH 110 357 Nodulin-like Gene Family AT2G37450 65.1 8.9e-88 320.5
Vvi13g256 ECH 102 333 Nodulin-like Gene Family AT2G37450 56.0 1.6e-68 256.5
Vvi18g286 . 104 349 Nodulin-like Gene Family AT2G37450 52.6 5.1e-67 251.5
Vvi8g620 ECH 16 359 Nodulin-like Gene Family AT2G37460 66.1 1.3e-124 443.4
Vvi18g284 . 8 356 Nodulin-like Gene Family AT2G37460 54.6 8.6e-100 360.9
Vvi13g256 ECH 4 333 Nodulin-like Gene Family AT2G37460 56.7 1.5e-99 360.1
Vvi18g286 . 16 334 Nodulin-like Gene Family AT2G37460 56.7 7.3e-99 357.8
Vvi8g477 . 12 338 Nodulin-like Gene Family AT2G37460 55.5 6.8e-97 351.3
Vvi18g285 . 15 335 Nodulin-like Gene Family AT2G37460 51.7 1.0e-92 337.4
Vvi13g934 . 1 316 Nodulin-like Gene Family AT2G37460 50.6 2.0e-80 296.6
Vvi18g1028 ECH 1 359 Nodulin-like Gene Family AT1G75500 78.5 2.6e-160 562.0
Vvi4g1060 ECH 4 364 Nodulin-like Gene Family AT1G75500 62.5 4.3e-131 464.9
Vvi17g263 . 7 339 Nodulin-like Gene Family AT1G75500 61.1 1.2e-117 420.2
Vvi8g620 ECH 16 343 Nodulin-like Gene Family AT5G13670 52.9 1.6e-93 340.1
Vvi8g620 ECH 18 348 Nodulin-like Gene Family AT2G39510 61.4 1.9e-112 402.9
Vvi13g256 ECH 17 335 Nodulin-like Gene Family AT2G39510 60.4 6.2e-111 397.9
Vvi18g284 . 18 341 Nodulin-like Gene Family AT2G39510 58.5 1.6e-103 373.2
Vvi8g477 . 15 336 Nodulin-like Gene Family AT2G39510 54.5 7.9e-98 354.4
Vvi18g286 . 18 355 Nodulin-like Gene Family AT2G39510 54.3 1.8e-97 353.2
Vvi18g285 . 15 354 Nodulin-like Gene Family AT2G39510 53.5 9.0e-94 340.9
Vvi14g1392 ECH 1 344 Nodulin-like Gene Family AT4G15540 50.3 8.4e-86 314.3
Vvi18g286 . 10 262 Nodulin-like Gene Family AT4G08290 60.3 4.7e-87 318.2
Vvi18g285 . 15 262 Nodulin-like Gene Family AT4G08290 59.3 7.8e-82 300.8
Vvi18g284 . 10 264 Nodulin-like Gene Family AT4G08290 54.2 4.3e-72 268.5
Vvi18g284 . 15 362 Nodulin-like Gene Family AT4G08300 64.7 1.4e-118 423.3
Vvi18g286 . 15 367 Nodulin-like Gene Family AT4G08300 52.1 2.2e-100 362.8
Vvi18g285 . 15 366 Nodulin-like Gene Family AT4G08300 51.0 1.8e-97 353.2
Vvi8g477 . 8 336 Nodulin-like Gene Family AT4G08300 51.7 2.2e-92 336.3
Vvi4g1215 . 1 254 Nodulin-like Gene Family AT5G64700 63.2 1.7e-83 306.2
Vvi11g750 . 1 263 Nodulin-like Gene Family AT4G30420 57.1 2.0e-80 296.6
Vvi8g477 . 1 336 Nodulin-like Gene Family AT5G07050 74.2 2.0e-139 492.7
Vvi13g934 . 1 360 Nodulin-like Gene Family AT5G07050 67.1 5.8e-131 464.5
Vvi18g284 . 18 336 Nodulin-like Gene Family AT5G07050 55.0 7.7e-99 357.8
Vvi8g620 ECH 4 343 Nodulin-like Gene Family AT5G07050 54.6 1.1e-94 344.0
Vvi18g285 . 9 335 Nodulin-like Gene Family AT5G07050 50.9 7.4e-94 341.3
Vvi8g477 . 12 382 Nodulin-like Gene Family AT3G56620 55.3 5.9e-109 391.3
Vvi13g934 . 1 341 Nodulin-like Gene Family AT3G56620 52.6 2.0e-88 323.2
Vvi18g284 . 13 333 Nodulin-like Gene Family AT3G56620 51.1 2.8e-87 319.3
Vvi14g59 ECH 3 331 Nodulin-like Gene Family AT1G09380 64.2 2.6e-117 419.1
Vvi8g477 . 12 388 Nodulin-like Gene Family AT2G40900 55.5 2.9e-111 399.1
Vvi13g934 . 1 343 Nodulin-like Gene Family AT2G40900 53.3 4.3e-94 342.0
Vvi17g263 . 6 353 Nodulin-like Gene Family AT3G18200 69.8 6.6e-132 467.6
Vvi18g1028 ECH 1 323 Nodulin-like Gene Family AT3G18200 60.1 1.0e-108 390.6
Vvi4g1060 ECH 4 332 Nodulin-like Gene Family AT3G18200 52.9 3.4e-96 349.0
Vvi18g284 . 15 369 Nodulin-like Gene Family AT1G44800 61.0 2.1e-119 426.0
Vvi18g286 . 15 355 Nodulin-like Gene Family AT1G44800 55.2 8.1e-103 370.9
Vvi18g285 . 15 354 Nodulin-like Gene Family AT1G44800 53.8 1.2e-101 367.1
Vvi2g970 . 80 326 Nodulin-like Gene Family AT5G45370 64.4 6.7e-94 340.9
Vvi18g284 . 13 317 Nodulin-like Gene Family AT1G21890 66.9 7.8e-116 414.1
Vvi18g285 . 15 312 Nodulin-like Gene Family AT1G21890 56.1 3.4e-95 345.5
Vvi18g286 . 15 312 Nodulin-like Gene Family AT1G21890 56.3 9.9e-95 344.0
Vvi8g477 . 3 314 Nodulin-like Gene Family AT1G21890 53.8 1.8e-91 333.2
Vvi8g620 ECH 13 322 Nodulin-like Gene Family AT1G21890 52.4 2.3e-83 306.2
Vvi13g934 . 1 276 Nodulin-like Gene Family AT1G21890 50.2 1.8e-75 280.0
Vvi9g660 ECH 5 562 Nodulin-like Gene Family AT1G80530 62.5 2.1e-195 679.1
Vvi11g575 ECH 1 513 Nodulin-like Gene Family AT1G80530 59.2 4.7e-171 598.2
Vvi2g933 . 1 351 Nodulin-like Gene Family AT4G19450 63.8 7.1e-140 494.2
Vvi15g49 . 1 285 Nodulin-like Gene Family AT4G19450 61.4 3.6e-91 332.4
Vvi17g482 . 1 522 Nodulin-like Gene Family AT1G74780 64.5 3.9e-191 664.8
Vvi17g481 . 1 262 Nodulin-like Gene Family AT1G74780 62.4 2.4e-84 310.1
Vvi3g141 . 6 541 Nodulin-like Gene Family AT4G34950 69.7 2.1e-219 758.8
Vvi14g1157 . 6 592 Nodulin-like Gene Family AT5G14120 74.9 8.1e-251 863.2
Vvi14g1155 . 6 592 Nodulin-like Gene Family AT5G14120 74.1 2.2e-248 855.1
Vvi17g88 . 5 589 Nodulin-like Gene Family AT5G14120 63.4 2.5e-212 735.3
Vvi3g141 . 1 390 Nodulin-like Gene Family AT2G16660 68.9 3.2e-150 528.5
Vvi13g567 ECH 6 511 Nodulin-like Gene Family AT2G39210 67.8 3.5e-212 734.9
Vvi8g1129 ECH 1 517 Nodulin-like Gene Family AT2G39210 68.3 1.0e-211 733.4
Vvi13g566 ECH 7 545 Nodulin-like Gene Family AT2G39210 66.6 1.0e-203 706.8
Vvi13g564 . 1 524 Nodulin-like Gene Family AT2G39210 65.6 4.4e-199 691.4
Vvi6g1092 . 557 1092 Nodulin-like Gene Family AT2G39210 56.9 5.0e-179 624.8
Vvi2g933 . 6 502 Nodulin-like Gene Family AT3G01630 54.3 4.2e-151 531.9
Vvi15g50 . 1 167 Nodulin-like Gene Family AT3G01630 64.5 3.7e-54 209.9
Vvi14g1157 . 6 428 Nodulin-like Gene Family AT3G01930 73.4 2.2e-176 615.5
Vvi14g1155 . 6 428 Nodulin-like Gene Family AT3G01930 72.9 8.4e-176 613.6
Vvi17g88 . 5 428 Nodulin-like Gene Family AT3G01930 66.4 1.8e-157 552.7
Vvi17g482 . 1 516 Nodulin-like Gene Family AT1G18940 60.6 7.8e-176 614.0
Vvi17g481 . 2 262 Nodulin-like Gene Family AT1G18940 55.6 4.5e-75 279.3
Vvi17g88 . 5 585 Nodulin-like Gene Family AT5G50520 52.9 7.0e-164 574.3
Vvi14g1155 . 13 592 Nodulin-like Gene Family AT5G50520 51.1 3.5e-155 545.4
Vvi17g88 . 5 585 Nodulin-like Gene Family AT5G50630 52.9 7.0e-164 574.3
Vvi14g1155 . 13 592 Nodulin-like Gene Family AT5G50630 51.1 3.5e-155 545.4
Vvi17g482 . 3 521 Nodulin-like Gene Family AT2G34350 57.7 1.7e-162 569.7
Vvi17g481 . 1 262 Nodulin-like Gene Family AT2G34350 55.5 1.1e-73 274.6
Vvi6g1092 . 548 1101 Nodulin-like Gene Family AT2G28120 63.9 2.3e-213 738.8
Vvi8g1129 ECH 1 507 Nodulin-like Gene Family AT2G28120 64.2 5.5e-191 664.5
Vvi13g567 ECH 25 526 Nodulin-like Gene Family AT2G28120 59.9 1.1e-180 630.2
Vvi13g564 . 1 524 Nodulin-like Gene Family AT2G28120 61.1 2.2e-179 625.9
Vvi13g566 ECH 12 557 Nodulin-like Gene Family AT2G28120 57.7 3.2e-175 612.1
Vvi2g933 . 1 503 Nodulin-like Gene Family AT1G31470 61.1 2.1e-174 609.4
Vvi15g49 . 1 290 Nodulin-like Gene Family AT1G31470 54.0 3.7e-78 289.7
Vvi15g50 . 1 161 Nodulin-like Gene Family AT1G31470 69.1 2.8e-57 220.3
Vvi18g1278 . 23 208 Nodulin-like Gene Family AT1G76800 78.0 6.0e-73 270.8
Vvi12g846 . 77 270 Nodulin-like Gene Family AT1G76800 66.5 8.2e-62 233.8
Vvi12g845 . 64 240 Nodulin-like Gene Family AT1G76800 63.3 6.9e-53 204.1
Vvi4g1355 . 29 197 Nodulin-like Gene Family AT1G76800 53.3 7.4e-39 157.5
Vvi12g846 . 79 269 Nodulin-like Gene Family AT3G25190 62.6 5.5e-59 224.6
Vvi18g1278 . 26 207 Nodulin-like Gene Family AT3G25190 62.6 1.5e-56 216.5
Vvi12g845 . 62 242 Nodulin-like Gene Family AT3G25190 60.2 8.6e-52 200.7
Vvi18g1278 . 25 208 Nodulin-like Gene Family AT1G21140 76.8 7.3e-74 273.9
Vvi12g846 . 83 270 Nodulin-like Gene Family AT1G21140 69.1 2.8e-65 245.4
Vvi12g845 . 64 241 Nodulin-like Gene Family AT1G21140 66.3 8.6e-59 223.8
Vvi4g1355 . 20 197 Nodulin-like Gene Family AT1G21140 53.4 6.2e-41 164.5
Vvi18g1278 . 24 204 Nodulin-like Gene Family AT3G43630 79.1 2.1e-73 272.3
Vvi12g846 . 67 266 Nodulin-like Gene Family AT3G43630 65.0 1.2e-63 240.0
Vvi12g845 . 64 243 Nodulin-like Gene Family AT3G43630 66.9 1.2e-57 219.9
Vvi4g1355 . 17 197 Nodulin-like Gene Family AT3G43630 52.5 5.3e-40 161.4
Vvi18g1278 . 24 208 Nodulin-like Gene Family AT3G43660 74.2 1.5e-71 266.2
Vvi12g846 . 76 270 Nodulin-like Gene Family AT3G43660 66.7 2.7e-65 245.4
Vvi12g845 . 64 241 Nodulin-like Gene Family AT3G43660 65.7 1.5e-58 223.0
Vvi4g1355 . 17 197 Nodulin-like Gene Family AT3G43660 53.6 8.9e-40 160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002454 1 3 1 2 1 2 3 2 2 2 2 2 3 2 2 3 2 1 4 2 2 2 3 3 2 1 1 1 3 1 61