Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g146 ATGACTCTAGAAGATTTCTTTACCCTGACTGAGATGAAGGATGGTCTTATGGTCCTGTCTAGAGTTGAGGAGCTGGTAAGAGTAATGCAGAAGGATAGCAATTGCGTTGTGAAGAATTTTCCTGAGGCAGCCAGACAGTGGTCTGCTGTTGCAAGTGCCTTGGCAGCCACTGAGAATAAGGATTCTCTTGATCTTTTTATTCGGTTAGATGGAATCCGGTTTCTTAAACACTGGCTTCAGGAAGCTCAAAAGTGTACCGAGGACAACATCGATTGCTCTGTGGAAGAATCAATCACTTCATTGTTAGGAGCACTTGAAAAGCTGCCTATTGATCAGGAATGTTCAAAATCTTCTGGGATTGAAGTTACTGTTAAGAATCTTTTTGGTCACAAGAGCTCAAGGGTTGTGGATAGGGCAAAGGCTCTGTATCATAGTTGGAACAAAGGAAGGAACAGTGATTCAGATAACTCAAATGTTGTCAGAGATGGCACCTGCTATGATAATGAGGTTTCAGCTTCTGCAGTAGTTGCTGTGGAGAGTGGAAGTTCTGAACATTCTGCTGTTGAAATTTCTTCATTAAGAGAAAATGGCAATGCAGAGAAAGCTGGTGAAGAGAATTTTTCTACTAAGACAGAATTTTCAACACCTCCTGAAGGGACTGCCTCCACTGAGGCACTTGATTGTTCAGTTTCTGGAAAAGGTGATATTGAAGAGAGCTTGGATGCCTCAAAGCCTAAAGATTCCACTGATGATGTGAAGAGGACAAAATTCTCAGAGGGTTGCATGCTTGGTCCAATGGAAGTTTCTTCTGATGCTGTTACATCAATGCCTGTGTGTAGTTCTTCACCTTCTGATTATCCAAGTCAGGGGTCTGATAAAAACCCTGATGTACCAAGTCATCTCGATGTCAAAGTGAGAGACTCCTGTCCTAAGAGCTGTCCTGACAGTGATCTGAACATGATTGCGTCTGAGTCTAGTAAAATGAAAGTGAAACATAAAGCTACAGGTGAATGTGGTGAATGCCTTCCAAATGTTTTGCGGGACTTGACTTGTGAAGTGGACAGCTTGAGTAAACCGGAGAATCCTGAGTCTTCTTTTTCAAGAGCTGAAGATACTAGTTCTGTCAAAGATGTTGGCGAGTTGAGCATGGAGGTGGGCAGAGGGGAAGATTCAGTAATCACAGATAATCTGTCAAAGCTGAAGACAGTCACCAAAGATTCTGATAGGATGGATGGTAGGTTGCAATCTGAGCCCAAATGTGCAGTTAATGATGATGCTTTAGAAGTTGCTCAGCGAATTGCTGGTGAGTTGGAGGAAGAATTGGGGAATTACAGTGAGCCATTCTGCAGCTCTTCAGAGAAAAGATATAGTAAGATGGATCAACCTGGTAGCCCTGATTCTGTCAATGGAAAACCAGTACATGGAACAGAAGCTACACAAAATCTTTCAGGTGGGGCTTCTCATTGCGAAGGAAATAATGTGGACACTGAACCTGAAGATTGCATTCAAGACACAGTTTCATCCTTGGTAACTGGGAATGCTCAAGAAGTGGCCAGTAATTCTGGGAAAGGCATGTTGGGTTTTGATCTGAATGAAGAAATTTACCCTGAGGAAATGGATTGCCCTAAAACTCCCATGTCTGCTCCCATTTCCATTCTTGCCACATCAGGACCACCAGCAGTTGCTAGGCCACCGTTGGTTCCTATACAGGTTGAAGGGGGCTCTGCTGTTACCAGTGCCTTCCATCCTGCAGATCTAGAAAAAACATCTGACGTTTATAAGACGGTATCTGCTGAGGGAAGCAGCTACAGTTTGAAGCAGAGGCAGGACTTGCTTGAGATTGATCTGAATGTGGCTGATGATGGTGTTGATGGAGCAGCTGATACAATAATTACGGATCAGATCCCTGCTTCATCTGGCATAATTTCTGGTGAGTCTTTGGTTGAAGTGAACTCAAAGCGGGCAGAGAGGCTTAATTTGGACCTGAATCGTGTTGGTGATGATGATGATGCTCCATCATCGCATAGGAGGGAGGTGGACTCCTTTTATCATAATCTGGATGAGCATCGTAGTCCCTCACATGCTGCCTCATCATCATCTAGGCAACCTTCAATGATTAACATTGACTTGAATGAAAATCTTTCTTTCACTAATGATATGTATGACCAACAGAATGATCTTGGGCAATCATCTTCGAAAGAAATGAGTGCTTCTGTAGGGTTTAAGCAGGAGGATTCCGATGTTCTGATTATTGGCTCTAGGGCACCAGTTAATGGAAGGAACTTCACACCATCCCAGTCTCTTCTGCTAAATGGGCAGGTTGGCAATTCATCAAGGGGCACCAACTTGGCAAGGCCTCAAGGTGTCATGGAGTTTCGGCATCCAGTGGCTTGTGCATCCTCGCCATTTGGGTACAGTGGATTTATAATGGGACCCTCTATGACTCTCTCCACTGTGTCCGGACCAGGCTCCATCCCCTACATGATAGATTCAAGAGGAGCTCCTATAGTACCGCAGATAATGGGTTCTGCAGTGACCTTTCCTCCTTCATGCTCTCCGCAGCCATTCCTAATGGGCATGAATTCCCAACCATTTCATGTGAATGGAGTTAAGCCTGCTAAGGCTGGTTTTGATCTGAATTCTAGCTTGATGGTGGAAGGTGGGAACAGGGAAACTGGGGCTTTGAGGCCAGGGCAGAGTCAGTTGATGGAGGGGTCTATGTGGTCCACTTCACAGTGCTTGAATTCTGGGATTGGAATGAAACGGAGTGAACCAGATGGTGGCATGGAACATTATCCATTCAGTTACAAACAGCAAAGGGTATGGCAGTAG 2832 44.56 MTLEDFFTLTEMKDGLMVLSRVEELVRVMQKDSNCVVKNFPEAARQWSAVASALAATENKDSLDLFIRLDGIRFLKHWLQEAQKCTEDNIDCSVEESITSLLGALEKLPIDQECSKSSGIEVTVKNLFGHKSSRVVDRAKALYHSWNKGRNSDSDNSNVVRDGTCYDNEVSASAVVAVESGSSEHSAVEISSLRENGNAEKAGEENFSTKTEFSTPPEGTASTEALDCSVSGKGDIEESLDASKPKDSTDDVKRTKFSEGCMLGPMEVSSDAVTSMPVCSSSPSDYPSQGSDKNPDVPSHLDVKVRDSCPKSCPDSDLNMIASESSKMKVKHKATGECGECLPNVLRDLTCEVDSLSKPENPESSFSRAEDTSSVKDVGELSMEVGRGEDSVITDNLSKLKTVTKDSDRMDGRLQSEPKCAVNDDALEVAQRIAGELEEELGNYSEPFCSSSEKRYSKMDQPGSPDSVNGKPVHGTEATQNLSGGASHCEGNNVDTEPEDCIQDTVSSLVTGNAQEVASNSGKGMLGFDLNEEIYPEEMDCPKTPMSAPISILATSGPPAVARPPLVPIQVEGGSAVTSAFHPADLEKTSDVYKTVSAEGSSYSLKQRQDLLEIDLNVADDGVDGAADTIITDQIPASSGIISGESLVEVNSKRAERLNLDLNRVGDDDDAPSSHRREVDSFYHNLDEHRSPSHAASSSSRQPSMINIDLNENLSFTNDMYDQQNDLGQSSSKEMSASVGFKQEDSDVLIIGSRAPVNGRNFTPSQSLLLNGQVGNSSRGTNLARPQGVMEFRHPVACASSPFGYSGFIMGPSMTLSTVSGPGSIPYMIDSRGAPIVPQIMGSAVTFPPSCSPQPFLMGMNSQPFHVNGVKPAKAGFDLNSSLMVEGGNRETGALRPGQSQLMEGSMWSTSQCLNSGIGMKRSEPDGGMEHYPFSYKQQRVWQ* 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1540152 1548972 - Vvi3g146 Vvi3g146 783821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g146 943 MobiDBLite consensus disorder prediction 446 494 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 178 227 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 237 253 - -
Vvi3g146 943 Pfam TFIIS helical bundle-like domain 101 148 IPR017923 -
Vvi3g146 943 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 214 - -
Vvi3g146 943 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 209 943 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 234 253 - -
Vvi3g146 943 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 15 151 IPR035441 -
Vvi3g146 943 MobiDBLite consensus disorder prediction 178 193 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 683 704 - -
Vvi3g146 943 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 62 157 IPR035441 -
Vvi3g146 943 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Vvi3g146 943 MobiDBLite consensus disorder prediction 273 295 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 356 375 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 208 227 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 357 372 - -
Vvi3g146 943 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 209 943 - -
Vvi3g146 943 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 214 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 446 464 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 473 490 - -
Vvi3g146 943 MobiDBLite consensus disorder prediction 273 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g146 - - - vvi:104878379 1826.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g146 Vvi18g1137 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008019 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14635 PF08711 Med26 2.40E-08 No_clan Vvi TR