Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g147 ATGAAAACCCCACTTGCTATTCTGCAACTTTACAGCATCCATACTTCAACCCAACGCTACCCACATGGAAGCGACCCCATCAACTATTCAAAACTCTTGAGTTGTTATTTGAAGTCTGGGGATATCATAAATGCAGGGAAGCTGTTTGAAGAAATTCCTAAACGGGATGTAGTTTCATGGTCTATAATGATCCATGGTTATAATAGAAATGGGTTTCGGAGAAAATCCATGGAACTGTTTTCCCAGATGAGGATTTCAAGTTTGGTTCCAACTTCTTTCACCATGGTTGGTGTTCTTGTCAGCATTGCAGGCTTAGGAGACCCTGTGCTTGGGCAATGTGTTCACGGACTAATTCTCAAATATGGGCTTGACTCTGATTTTAGAGTGGTTACTGCTTTGTTGAATGCATATGCAAAATGCGGAAATGTGGTTGATTCTTATAGAGTGTTTGAGCAACTAGAGAATCCGGGTTTGGTCTCATGCAGTGCAATTGTTTCCGGGTTTGTCTACAATGAGCTCTTTGAAGAGGCTGTTGTATTGTTTAACCAGTTCCGGAAGCTTGGCATGGTGCCTAATGCTGCAACAGTATTGACTCTCATTCGAGCTTGTGTGGCTTTAGAGTCGCGGCGACTGTGTGAATCCATTCATGGGATGGTTGTAAAACTGAGTCTTGTTTTGGATGTGGCTGTTAACAACTCGGTTCTTGATATGTATTCAAGTATGCTGGATTTGGATGCTGCAACAAGAGTTTTTGAAGGGATGGAATGTAGAGATGTAATAAGCTGGACTACAATGATTAATTTACTGGTCTGTCTTGAATATGCTTCTGATGCTCTCATGCTTTTTCGCCAGATGAGAAATACCGGGATCTGTAATGATGTGGTGGTTGTCATGAATCTGATTTCAGCTTGTGCTATTTTAGGAGATTTGAAGAGAGGCAGAGAAATCCATACTCAAGCTATTGTATGTGGATTTGGATCAGAGCTCCCGCTTACAAACTCGATCATTGCAATGTATTCAAAGTGTGGCGACCTAGATTCTTCAAGAACTGTGTTTGATCAAACTACTGGGAAGAGTCTTGTTTCCTGGACAGCGATGATTTTAGGATGTGTGCAGAATGGATACCCAAGAGAAGCACTGAAGCTCTTGATTAAAATGAGAGGAGAAGAGAGTTTTTACCTTGATTCAATAATGCTGATAGGGGTTCTATCAGCTTCTGGTGAACTTGCTCTTTTGGAGCTCTGCCAGCAGCTCCATTGCTATGCTTTTGAATCTGGTTTCCCCCGATATAGATTGGTTCAGAATAGTCTGATATCAGCATACTCAAAGTGTGGAGATGTGGAACCTGCTTACAATGTGTTTGGGCAGATGGGTTATATCCGAGATATAGTATCTTGGAATGCAATTCTAAACGGGTATGGGATCAATGGCCATGGAGAAATTGCTGTCGCCCTCTACCATGAAATGAGGAAGGGCCGGGAAAATCCTGATGCTGCGACGTACCTTTGTGTTTTGAGTGCTTGTAGTCACTCAGGGTTGGTGGATGATGGTCTGGTTATTTTCAATCAGATGGTGGAAGAGCGTACAATCAGGCCTAGCCAAGACCACTGCGGGTGCATCGTTGACTTGCTTGCAAGAGCAGGCTGCTTCTCAGATGCAAGAGAGTTTGTAAGCCGATATATGGAGAAGATGGGTCCAAATGCTTGGAGGGCTTTGCTCAGTGGATGTCAGCTTCATGGTAATGTAGGGCTTGCAGAACTTGCAGCTAGAAGGGTGTGTGAACTGGATCCAGAAGAGCCCGGTCAAGTCGTTCTACTTTCAAATGTTTATGCATCAGTTGGGAGGTTCCAGGATGCTGAAGCTTTGAGAGCAAGTATGAAGAAGAAGGAATTGATCAAGAATCCGGGGATAAGCTTGCTTAATAGAATCCCATATGATGTTGGTTGA 1947 43.19 MKTPLAILQLYSIHTSTQRYPHGSDPINYSKLLSCYLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELFSQMRISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCGNVVDSYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRACVALESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVISWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQAIVCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREALKLLIKMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAFESGFPRYRLVQNSLISAYSKCGDVEPAYNVFGQMGYIRDIVSWNAILNGYGINGHGEIAVALYHEMRKGRENPDAATYLCVLSACSHSGLVDDGLVIFNQMVEERTIRPSQDHCGCIVDLLARAGCFSDAREFVSRYMEKMGPNAWRALLSGCQLHGNVGLAELAARRVCELDPEEPGQVVLLSNVYASVGRFQDAEALRASMKKKELIKNPGISLLNRIPYDVG* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1549918 1551865 - Vvi3g147 Vvi3g147 783822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g147 648 Gene3D Tetratricopeptide repeat domain 9 107 IPR011990 GO:0005515
Vvi3g147 648 Gene3D Tetratricopeptide repeat domain 325 419 IPR011990 GO:0005515
Vvi3g147 648 Gene3D Tetratricopeptide repeat domain 112 210 IPR011990 GO:0005515
Vvi3g147 648 Gene3D Tetratricopeptide repeat domain 435 641 IPR011990 GO:0005515
Vvi3g147 648 Gene3D Tetratricopeptide repeat domain 211 324 IPR011990 GO:0005515
Vvi3g147 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 389 IPR002885 -
Vvi3g147 648 PANTHER BNACNNG07920D PROTEIN 275 641 - -
Vvi3g147 648 PANTHER BNACNNG07920D PROTEIN 195 406 - -
Vvi3g147 648 PANTHER BNACNNG07920D PROTEIN 25 267 - -
Vvi3g147 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Vvi3g147 648 Pfam PPR repeat family 462 509 IPR002885 -
Vvi3g147 648 PANTHER - 275 641 - -
Vvi3g147 648 PANTHER - 195 406 - -
Vvi3g147 648 PANTHER - 25 267 - -
Vvi3g147 648 Pfam PPR repeat 361 388 IPR002885 -
Vvi3g147 648 Pfam PPR repeat 435 457 IPR002885 -
Vvi3g147 648 Pfam PPR repeat 29 56 IPR002885 -
Vvi3g147 648 Pfam PPR repeat 333 354 IPR002885 -
Vvi3g147 648 Pfam PPR repeat 130 154 IPR002885 -
Vvi3g147 648 Pfam PPR repeat 58 84 IPR002885 -
Vvi3g147 648 Pfam PPR repeat 260 289 IPR002885 -
Vvi3g147 648 Pfam PPR repeat 159 188 IPR002885 -
Vvi3g147 648 Pfam E motif 579 639 IPR046848 -
Vvi3g147 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 56 90 IPR002885 -
Vvi3g147 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 532 IPR002885 -
Vvi3g147 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Vvi3g147 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Vvi3g147 648 TIGRFAM PPR: pentatricopeptide repeat domain 260 293 IPR002885 -
Vvi3g147 648 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Vvi3g147 648 TIGRFAM PPR: pentatricopeptide repeat domain 500 527 IPR002885 -
Vvi3g147 648 TIGRFAM PPR: pentatricopeptide repeat domain 361 389 IPR002885 -
Vvi3g147 648 TIGRFAM PPR: pentatricopeptide repeat domain 159 193 IPR002885 -
Vvi3g147 648 TIGRFAM PPR: pentatricopeptide repeat domain 58 91 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g147 - - - vvi:100260508 1284.24
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g147 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070467 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1