Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g148 ATGTCTTCGAATCCTTATAGAAACCCTAATTCTCTCTACCCGGAAGTTGATCTCTCAAACCCAGAAGCCACTTCTCCTCTTATCTCAAACCCAACTTCTGCTTCATCTTCGTCGCTGTACCCTTCTCTTGAAGTGAAAGAGCTCGCTGAGAATCTTTTCCCGGACGAAAACGATGCCGTTTTACAAAACCCCAGTTCCCAACCATTCGAAGAAGTCCTCGTCAGAGTCTCCGGCGCCATCGTCCATCTCATCGACAAGCAACACAGCGTCGAGCTCGCTTCCGGAGTGCTTACCATAATCCAGTGGCCATTGGCGAAAGATGAGGCAGCGAATTTGTTGAACTATGGATTAACTATCGCGTCGAAGGGGCAAGAGGGATTGTTGAAGGAATTGGATGCGGTTTTGGAGAAGTACAGTTGTTTTTCGGTGCAGAAGGTGAAGGGGACGGTTGGGTGGGAGAAGAAGGAATTGATGGAGGAGAGGTCGGGGGCGTACTGGACGACACTGGCTCCTAATGTGGAGGATTACAGTGGGTGCGTTGCGAGGATGATTGCCGCCGGATCAGGGCAGCTCATCAAGGGAATCCTGTGGTCGGGCAATGTAACGGTGGATGGATTGAATTGGGGGAATGAGTTTCTGAAGAAAAGAATGGGGCCGGGTTCCAAATCCGAAATTAGTCCAGAGGCAATGAAGAGGATGAAAAGGGTTAAGAAGCTGACAAAGATGTCCGAGAAGGTGGCAACTGGAGTTCTTTCTGGGGTTGTTAAAGTCTCTGGATTCTTTACAAGTTCTATTGTGAACTCAAAAGTGGGCAAGAAATTTTTTAGCCTGTTGCCTGGAGAAATTGTCCTTGCTTCATTAGATGGATTTAATAAAGTCTGTGATGCTGTTGAAGTTGCTGGAAAGAACGTCATGTCTACCACCTCAGTTGTGACAACTGGGCTTGTTTCACAGAGGTATGGAGAACAGGCAGCACATGTGACACACGAGGGGCTTGGTGCTGCAGGGCATGCTATTGGGACTGCTTGGGCAGTGTTCAAGATACGAAAAGCTCTCAACCCGAAGAGCGCATTTAAGCCCACAAAACTTGCAAAAGCTGCTGCTGAAGCAAATTCTGCTAAACTGAAGACTAAACAAGCAAAGTAA 1146 47.82 MSSNPYRNPNSLYPEVDLSNPEATSPLISNPTSASSSSLYPSLEVKELAENLFPDENDAVLQNPSSQPFEEVLVRVSGAIVHLIDKQHSVELASGVLTIIQWPLAKDEAANLLNYGLTIASKGQEGLLKELDAVLEKYSCFSVQKVKGTVGWEKKELMEERSGAYWTTLAPNVEDYSGCVARMIAAGSGQLIKGILWSGNVTVDGLNWGNEFLKKRMGPGSKSEISPEAMKRMKRVKKLTKMSEKVATGVLSGVVKVSGFFTSSIVNSKVGKKFFSLLPGEIVLASLDGFNKVCDAVEVAGKNVMSTTSVVTTGLVSQRYGEQAAHVTHEGLGAAGHAIGTAWAVFKIRKALNPKSAFKPTKLAKAAAEANSAKLKTKQAK* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1559955 1564835 + Vvi3g148 Vvi3g148 783823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g148 381 PANTHER OS06G0717100 PROTEIN 8 378 - -
Vvi3g148 381 MobiDBLite consensus disorder prediction 1 38 - -
Vvi3g148 381 PANTHER SPARTIN 8 378 IPR045036 -
Vvi3g148 381 Pfam Senescence domain 183 368 IPR009686 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g148 K19366 SPG20; spartin - vvi:100267615 661.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g148 Vvi4g1137 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g148 . . . Bda08g00997 . . Bma05g00361 . . . Cma02g00252 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00490 . Chy11g00261 . . . . . . Bpe05g00284 . . Sed02g0073 Cmo02g00251 . . . . . . Cpe05g01377 Bhi10g01858 Tan05g1147 Cmetu11g2225 . Hepe08g0287 . . Cla02g01162 Cam02g1238 Cec02g1247 Cco02g1287 Clacu02g1220 Cmu02g1188 Cre02g1499 . Csa02g01384 . Cme11g00386
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002053 1 1 3 3 1 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 5 2 66