Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g15 ATGGCTTCCGATTCTTCTCCGGCCAACATCAATGGCGGACCTTCCTCTCCCGATGACTCGTACTCGAGCCCGATCGGCAACACTTTCTCGTCCCCAGGCGATGGCACTCGCCGGAGAAGAGGGCGGCGGCCGTCCGCGTCTCCTGCATTTGCGACTCCGCCACATCCACACTCCCGATTCGCCGCTTCTGAGACAACGCCAACTCCGTCTGAGGCAACCCCAACACCCTCTAGCGGACGCCGGAGAAGGGGATCTAGAAGGGCTTCCGTGTCCACTCCAATTGCCACGCCTTCATCAACTGATGAAGCACCGCCTTCGTCTGAAGGTGAAGGGGATGACATGGATGAAGCTCCACCGATGTTCGTGTGGGGCACGAACATTAGCGTGCAGGATGTAAATGCTGCAATTCTTAGGTTTTTAAGGCATTTTCGTGAACACCCATCTCATACAGAGGGGAAGTACATGAGAGCCATACACAGAGTTCTTGAAATAGAGGGAGAATCACTTGATGTGGATGCCCACGATGTGTTTGATTATGACTCGGACCTTTACACCAAGATGGTTAGATACCCACTTGAGGTTCTTGCGATATTTGACATTGTTTTGATGGACATGGTCAGTAGAATCAATCCGCTGTTTGAAAAGCATATCCAGGCTCGCATTTTTAATCTCAAGACATCAACATCGATGAGAAATCTCAACCCATCTGATATTGAGAAGATGGTGTCATTGAAAGGGATGATTATTCGGTGTAGTTCAATTATACCTGAAATCAGGGAAGCAGTATTTAGATGCCTTGTATGTAGACACTACTCTGACCCCATTGTTGTGGATCGAGGGCGAATCAATGAACCAACAACTTGTGGGAGGCCTGAGTGTCTTGCCAAGAACTCCATGACACTGATTCACAACCGATGCAGGTTTGCTGATAAGCAAATTGTGAGGCTTCAAGAGACACCAGATGATATCCCTGAGGGAGGGACACCACACACTGTGAGTTTGTTGATGCATGACAAGCTGGTGGACGCTGGAAAGCCCGGTGACAGAGTTGAGGTGACTGGAATTTACAGGGCTATGAGTGTCAGAGTCGGACCAACACAGAGAACCACTTACATTGACTGTCTTCATTTAAAGAAGACTGACAAGTCAAGAATGCAAGCAGAGGATCCCATGGAAGTTGAAAATGGCTCAGGTAGAAATGAAGAAGACACCCTGCTTGGCTATGAAGACAAGGTGGCACAATTAAAGGAGCTGTCAAAGCAGCCTGATATATATGACCGACTGACCAGGTCTTTGGCACCAAACATCTGGGAGCTGGATGATGTGAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGGAGTGCTTTGAAGTTGCCATCTGGGGCTAGCTTCCGTGGTGACATCAATATCCTTCTTGTTGGTGATCCTGGAACGAGCAAATCCCAGTTGCTCCAATACATACACAAGTTATCTCCTCGTGGAATTTACACTAGTGGAAGGGGGAGCTCTGCTGTTGGCTTGACTGCTTATGTTACGAAAGATCCTGAAACAGGGGAAACTGTTTTGGAGAGTGGAGCTCTGGTTCTGAGTGACAGAGGAATCTGCTGCATTGATGAATTTGACAAAATGTCTGACAATGCTAGGAGCATGTTGCATGAGGTGATGGAACAACAAACTGTTTCAATTGCAAAAGCGGGAATTATTGCCTCTCTTAATGCTAGGACTTCCGTATTGGCTTGTGCAAATCCAAGTGGCTCACGTTACAATCCTCGCTTGTCAGTCATAGACAACATACACCTTCCTCCTACCTTATTGTCCAGGTTTGATTTGATTTACCTAATTCTTGACAAGGCTGATGAACAAACAGACAGGCGTCTCGCCAAGCATATTGTTGCTTTACACTTTGAGAATCCTGAGAGTCTAGAGCAAGATGTATTGGACCTTCCTACATTAACTGCATATGTGAGCTATGCCCGAAAGCATATCCATCCCAAGTTATCTGATGAAGCTGCTGAAGAGCTGACACGAGGTTATGTTGAGATGAGGAGGAGAGGAAACTTCCCCGGCAGTAGCAAAAAGGTTATAACAGCCACACCTAGACAGATTGAGAGTTTGATACGCCTTGGTGAAGCCCTGGCCCGTATTCGTTTCTCAGAATGGGTTGAAAAGCGAGACGTAATGGAGGCATTTCGACTTCTGGAAGTTGCATTGCAACAGTCAGCCACAGATCACTCCACCGGAACGATTGACATGGATCTCATTACCACTGGAGTGTCAGCAAGCGAAAGGATGAGACGGGAGAGTCTGGTATCAACAACCCGCAACATAATTATGGAGAAGATGCAACTTGGAGGACCCTCAATGCGGTTGCTGGAGTTACTTGAAGAGCTGAAGAAGCAAAGTTCTTGCAGCGAAGCGCACCTTAATGATCTGAGAAATGCACTTGCCACTCTTGCTAGTGAGGGATTTGTGTCGGTCCATGGTGACAGTGTGAAGAGAATATGA 2505 47.39 MASDSSPANINGGPSSPDDSYSSPIGNTFSSPGDGTRRRRGRRPSASPAFATPPHPHSRFAASETTPTPSEATPTPSSGRRRRGSRRASVSTPIATPSSTDEAPPSSEGEGDDMDEAPPMFVWGTNISVQDVNAAILRFLRHFREHPSHTEGKYMRAIHRVLEIEGESLDVDAHDVFDYDSDLYTKMVRYPLEVLAIFDIVLMDMVSRINPLFEKHIQARIFNLKTSTSMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAVFRCLVCRHYSDPIVVDRGRINEPTTCGRPECLAKNSMTLIHNRCRFADKQIVRLQETPDDIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTTYIDCLHLKKTDKSRMQAEDPMEVENGSGRNEEDTLLGYEDKVAQLKELSKQPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFENPESLEQDVLDLPTLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLGEALARIRFSEWVEKRDVMEAFRLLEVALQQSATDHSTGTIDMDLITTGVSASERMRRESLVSTTRNIIMEKMQLGGPSMRLLELLEELKKQSSCSEAHLNDLRNALATLASEGFVSVHGDSVKRI* 835
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 277283 284427 - Vvi3g15 Vvi3g15 783690
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g15 834 Gene3D - 126 224 - -
Vvi3g15 834 MobiDBLite consensus disorder prediction 383 402 - -
Vvi3g15 834 Pfam MCM OB domain 230 359 IPR033762 -
Vvi3g15 834 CDD MCM4 427 736 - -
Vvi3g15 834 ProSitePatterns MCM family signature. 533 541 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vvi3g15 834 Gene3D - 743 825 IPR036388 -
Vvi3g15 834 Pfam MCM AAA-lid domain 650 736 IPR041562 -
Vvi3g15 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 751 IPR027417 -
Vvi3g15 834 Pfam MCM N-terminal domain 135 226 IPR027925 -
Vvi3g15 834 Gene3D - 257 309 - -
Vvi3g15 834 Coils Coil 794 814 - -
Vvi3g15 834 SUPERFAMILY Nucleic acid-binding proteins 138 372 IPR012340 -
Vvi3g15 834 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 95 833 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi3g15 834 SMART AAA_5 466 616 IPR003593 -
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 252 265 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 303 315 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 440 451 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 586 603 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 738 747 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi3g15 834 MobiDBLite consensus disorder prediction 89 105 - -
Vvi3g15 834 MobiDBLite consensus disorder prediction 59 79 - -
Vvi3g15 834 ProSiteProfiles MCM family domain profile. 424 630 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 465 480 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 525 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 553 566 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 577 589 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi3g15 834 PRINTS Mini-chromosome maintenance (MCM) protein family signature 604 612 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi3g15 834 MobiDBLite consensus disorder prediction 1 119 - -
Vvi3g15 834 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 95 833 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi3g15 834 Gene3D - 230 370 IPR012340 -
Vvi3g15 834 Gene3D - 408 742 IPR027417 -
Vvi3g15 834 MobiDBLite consensus disorder prediction 1 34 - -
Vvi3g15 834 Pfam MCM P-loop domain 412 634 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi3g15 834 SMART mcm 226 738 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g15 K02212 - vvi:100262415 1588.93