Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g15 | ATGGCTTCCGATTCTTCTCCGGCCAACATCAATGGCGGACCTTCCTCTCCCGATGACTCGTACTCGAGCCCGATCGGCAACACTTTCTCGTCCCCAGGCGATGGCACTCGCCGGAGAAGAGGGCGGCGGCCGTCCGCGTCTCCTGCATTTGCGACTCCGCCACATCCACACTCCCGATTCGCCGCTTCTGAGACAACGCCAACTCCGTCTGAGGCAACCCCAACACCCTCTAGCGGACGCCGGAGAAGGGGATCTAGAAGGGCTTCCGTGTCCACTCCAATTGCCACGCCTTCATCAACTGATGAAGCACCGCCTTCGTCTGAAGGTGAAGGGGATGACATGGATGAAGCTCCACCGATGTTCGTGTGGGGCACGAACATTAGCGTGCAGGATGTAAATGCTGCAATTCTTAGGTTTTTAAGGCATTTTCGTGAACACCCATCTCATACAGAGGGGAAGTACATGAGAGCCATACACAGAGTTCTTGAAATAGAGGGAGAATCACTTGATGTGGATGCCCACGATGTGTTTGATTATGACTCGGACCTTTACACCAAGATGGTTAGATACCCACTTGAGGTTCTTGCGATATTTGACATTGTTTTGATGGACATGGTCAGTAGAATCAATCCGCTGTTTGAAAAGCATATCCAGGCTCGCATTTTTAATCTCAAGACATCAACATCGATGAGAAATCTCAACCCATCTGATATTGAGAAGATGGTGTCATTGAAAGGGATGATTATTCGGTGTAGTTCAATTATACCTGAAATCAGGGAAGCAGTATTTAGATGCCTTGTATGTAGACACTACTCTGACCCCATTGTTGTGGATCGAGGGCGAATCAATGAACCAACAACTTGTGGGAGGCCTGAGTGTCTTGCCAAGAACTCCATGACACTGATTCACAACCGATGCAGGTTTGCTGATAAGCAAATTGTGAGGCTTCAAGAGACACCAGATGATATCCCTGAGGGAGGGACACCACACACTGTGAGTTTGTTGATGCATGACAAGCTGGTGGACGCTGGAAAGCCCGGTGACAGAGTTGAGGTGACTGGAATTTACAGGGCTATGAGTGTCAGAGTCGGACCAACACAGAGAACCACTTACATTGACTGTCTTCATTTAAAGAAGACTGACAAGTCAAGAATGCAAGCAGAGGATCCCATGGAAGTTGAAAATGGCTCAGGTAGAAATGAAGAAGACACCCTGCTTGGCTATGAAGACAAGGTGGCACAATTAAAGGAGCTGTCAAAGCAGCCTGATATATATGACCGACTGACCAGGTCTTTGGCACCAAACATCTGGGAGCTGGATGATGTGAAGAAAGGCCTTCTTTGCCAGCTTTTTGGTGGGAGTGCTTTGAAGTTGCCATCTGGGGCTAGCTTCCGTGGTGACATCAATATCCTTCTTGTTGGTGATCCTGGAACGAGCAAATCCCAGTTGCTCCAATACATACACAAGTTATCTCCTCGTGGAATTTACACTAGTGGAAGGGGGAGCTCTGCTGTTGGCTTGACTGCTTATGTTACGAAAGATCCTGAAACAGGGGAAACTGTTTTGGAGAGTGGAGCTCTGGTTCTGAGTGACAGAGGAATCTGCTGCATTGATGAATTTGACAAAATGTCTGACAATGCTAGGAGCATGTTGCATGAGGTGATGGAACAACAAACTGTTTCAATTGCAAAAGCGGGAATTATTGCCTCTCTTAATGCTAGGACTTCCGTATTGGCTTGTGCAAATCCAAGTGGCTCACGTTACAATCCTCGCTTGTCAGTCATAGACAACATACACCTTCCTCCTACCTTATTGTCCAGGTTTGATTTGATTTACCTAATTCTTGACAAGGCTGATGAACAAACAGACAGGCGTCTCGCCAAGCATATTGTTGCTTTACACTTTGAGAATCCTGAGAGTCTAGAGCAAGATGTATTGGACCTTCCTACATTAACTGCATATGTGAGCTATGCCCGAAAGCATATCCATCCCAAGTTATCTGATGAAGCTGCTGAAGAGCTGACACGAGGTTATGTTGAGATGAGGAGGAGAGGAAACTTCCCCGGCAGTAGCAAAAAGGTTATAACAGCCACACCTAGACAGATTGAGAGTTTGATACGCCTTGGTGAAGCCCTGGCCCGTATTCGTTTCTCAGAATGGGTTGAAAAGCGAGACGTAATGGAGGCATTTCGACTTCTGGAAGTTGCATTGCAACAGTCAGCCACAGATCACTCCACCGGAACGATTGACATGGATCTCATTACCACTGGAGTGTCAGCAAGCGAAAGGATGAGACGGGAGAGTCTGGTATCAACAACCCGCAACATAATTATGGAGAAGATGCAACTTGGAGGACCCTCAATGCGGTTGCTGGAGTTACTTGAAGAGCTGAAGAAGCAAAGTTCTTGCAGCGAAGCGCACCTTAATGATCTGAGAAATGCACTTGCCACTCTTGCTAGTGAGGGATTTGTGTCGGTCCATGGTGACAGTGTGAAGAGAATATGA | 2505 | 47.39 | MASDSSPANINGGPSSPDDSYSSPIGNTFSSPGDGTRRRRGRRPSASPAFATPPHPHSRFAASETTPTPSEATPTPSSGRRRRGSRRASVSTPIATPSSTDEAPPSSEGEGDDMDEAPPMFVWGTNISVQDVNAAILRFLRHFREHPSHTEGKYMRAIHRVLEIEGESLDVDAHDVFDYDSDLYTKMVRYPLEVLAIFDIVLMDMVSRINPLFEKHIQARIFNLKTSTSMRNLNPSDIEKMVSLKGMIIRCSSIIPEIREAVFRCLVCRHYSDPIVVDRGRINEPTTCGRPECLAKNSMTLIHNRCRFADKQIVRLQETPDDIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTTYIDCLHLKKTDKSRMQAEDPMEVENGSGRNEEDTLLGYEDKVAQLKELSKQPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFENPESLEQDVLDLPTLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLGEALARIRFSEWVEKRDVMEAFRLLEVALQQSATDHSTGTIDMDLITTGVSASERMRRESLVSTTRNIIMEKMQLGGPSMRLLELLEELKKQSSCSEAHLNDLRNALATLASEGFVSVHGDSVKRI* | 835 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 277283 | 284427 | - | Vvi3g15 | Vvi3g15 | 783690 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g15 | 834 | Gene3D | - | 126 | 224 | - | - | |
| Vvi3g15 | 834 | MobiDBLite | consensus disorder prediction | 383 | 402 | - | - | |
| Vvi3g15 | 834 | Pfam | MCM OB domain | 230 | 359 | IPR033762 | - | |
| Vvi3g15 | 834 | CDD | MCM4 | 427 | 736 | - | - | |
| Vvi3g15 | 834 | ProSitePatterns | MCM family signature. | 533 | 541 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vvi3g15 | 834 | Gene3D | - | 743 | 825 | IPR036388 | - | |
| Vvi3g15 | 834 | Pfam | MCM AAA-lid domain | 650 | 736 | IPR041562 | - | |
| Vvi3g15 | 834 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 435 | 751 | IPR027417 | - | |
| Vvi3g15 | 834 | Pfam | MCM N-terminal domain | 135 | 226 | IPR027925 | - | |
| Vvi3g15 | 834 | Gene3D | - | 257 | 309 | - | - | |
| Vvi3g15 | 834 | Coils | Coil | 794 | 814 | - | - | |
| Vvi3g15 | 834 | SUPERFAMILY | Nucleic acid-binding proteins | 138 | 372 | IPR012340 | - | |
| Vvi3g15 | 834 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 95 | 833 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g15 | 834 | SMART | AAA_5 | 466 | 616 | IPR003593 | - | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 252 | 265 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 303 | 315 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 440 | 451 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 586 | 603 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 738 | 747 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Vvi3g15 | 834 | MobiDBLite | consensus disorder prediction | 89 | 105 | - | - | |
| Vvi3g15 | 834 | MobiDBLite | consensus disorder prediction | 59 | 79 | - | - | |
| Vvi3g15 | 834 | ProSiteProfiles | MCM family domain profile. | 424 | 630 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 465 | 480 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 525 | 539 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 553 | 566 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 577 | 589 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g15 | 834 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 604 | 612 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g15 | 834 | MobiDBLite | consensus disorder prediction | 1 | 119 | - | - | |
| Vvi3g15 | 834 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 95 | 833 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g15 | 834 | Gene3D | - | 230 | 370 | IPR012340 | - | |
| Vvi3g15 | 834 | Gene3D | - | 408 | 742 | IPR027417 | - | |
| Vvi3g15 | 834 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Vvi3g15 | 834 | Pfam | MCM P-loop domain | 412 | 634 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vvi3g15 | 834 | SMART | mcm | 226 | 738 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g15 | K02212 | - | vvi:100262415 | 1588.93 |