Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g150 ATGGCTCGATACGACCGTGCGATCACCGTGTTTTCACCGGACGGCCACCTATTCCAGGTGGAGTACGCCCTGGAAGCCGTCCGTAAGGGCAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTCCTCGGCGTCGAAAAGAAGTCCACCGCTAAGCTCCAGGACTCTCGAACGGTCCGGAAGATTGTTAACCTGGATGATCACATTGCATTGGCCTGTGCTGGGCTAAAAGCAGATGCACGTGTGTTGATAAATAGAGCACGTATTGAATGTCAGAGCCATAGGCTTACAGTCGAGGATCCTGTCACTGTTGAATATATTACTCGGTACATTGCTGGTCTTCAGCAGAAGTACACCCAGAGCGGCGGTGTAAGACCATTTGGCCTTTCAACTTTGATTATTGGCTTTGACCCCTACACAGGTGTTCCATCACTTTATCAGACAGACCCATCGGGAACATTTTCAGCATGGAAAGCCAATGCAACCGGGAGAAACTCAAATTCAATGCGGGAGTTCTTGGAAAAAAATTATAAAGAAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTGAGATCGAAGCAGAGAAAGCAGCAGCTGAGGCTGCTAAGAAGGGCCCTCCCAAAGAAACCTAG 750 49.47 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTAKLQDSRTVRKIVNLDDHIALACAGLKADARVLINRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETVKLAIRALLEVVESGGKNIEIAVMTKEHGLRQLEEAEIDAIVAEIEAEKAAAEAAKKGPPKET* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1570598 1575263 + Vvi3g150 Vvi3g150 783825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g150 249 ProSitePatterns Proteasome alpha-type subunits signature. 4 26 IPR000426 GO:0006511|GO:0019773
Vvi3g150 249 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 245 IPR029055 -
Vvi3g150 249 ProSiteProfiles Proteasome alpha-type subunit profile. 19 228 IPR023332 -
Vvi3g150 249 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 234 IPR029055 -
Vvi3g150 249 CDD proteasome_alpha_type_7 4 210 - -
Vvi3g150 249 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 248 - -
Vvi3g150 249 Pfam Proteasome subunit 27 210 IPR001353 GO:0005839|GO:0051603
Vvi3g150 249 Coils Coil 219 239 - -
Vvi3g150 249 Pfam Proteasome subunit A N-terminal signature 4 26 IPR000426 GO:0006511|GO:0019773
Vvi3g150 249 SMART Proteasome_A_N_2 4 26 IPR000426 GO:0006511|GO:0019773
Vvi3g150 249 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g150 K02731 PSMA7; 20S proteasome subunit alpha 4 [EC:3.4.25.1] - vvi:100257349 438.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g150 Vvi4g1139 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002432 2 1 2 0 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 61