Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g152 ATGGCGTTACCCGTCGTTGACACAGACTACCTCAAGGAGATCGACAAGGCTCGTCGTGATCTCCGAGCTCTCATCGCCTCCAAGAACTGCGCTCCGATCATGCTCCGCCTGGCGTGGCATGATGCGGGGACGTACGATGTTCACACCAAGACTGGCGGCCCTAACGGCTCGATCAGGACTGAGGAGGAGTACTCTCATGGTTCGAATAATGGCTTGAAAATAGCTATTGATTTTTGCGAGGAAGTGAAGTCCAAATACCCAAAGATCACTTATGCAGACCTATACCAGCTTTCAGGAGTTGTTGCAGTTGAGATCACAGGAGGCCCCACCATTGACTTTGTACCTGGTAGAAAGGATTCAATGATTTCTCCCAAGGAAGGGCGGCTTCCAGCTGCCAAAAAAGGGGTATCACATCTTAGGGACATTTTTTACCGGATGGGCCTGTCTGGCAAGGATATTGTGGCATTGTCAGGAGGGCACACATTGGGAAGGGCACATCCAGAGCGATCGGGTTTTGATGGCCCTTGGACTAAGAATCCTCTGAAGTTTGATAACTCATACTTTGTGGAGTTACTGCAAGGGGAATCAGAGGGGCTGTTGAAACTTCCAACAGACAAGGCTTTATTGGATGATCCTGAGTTCCGTGGTTATGTTGAGCTGTATGCAAAGGATGAGGATGCATTCTTTAGGGACTATGCAGTATCTCATAAGAAACTCTCAGAGCTGGGGTTTACTCCTTCAAGTTCCTCCGGCTCCAAGGTCATTGCCAAAGACAGCACCGTATTGGCACAGAGCGCTGTAGGAGTTGTAGTTGCTGCTGCAGTGGTGATCCTGAGTTACTTCTACGAGGTTCGCAAAAGAATGAAGTAA 870 49.08 MALPVVDTDYLKEIDKARRDLRALIASKNCAPIMLRLAWHDAGTYDVHTKTGGPNGSIRTEEEYSHGSNNGLKIAIDFCEEVKSKYPKITYADLYQLSGVVAVEITGGPTIDFVPGRKDSMISPKEGRLPAAKKGVSHLRDIFYRMGLSGKDIVALSGGHTLGRAHPERSGFDGPWTKNPLKFDNSYFVELLQGESEGLLKLPTDKALLDDPEFRGYVELYAKDEDAFFRDYAVSHKKLSELGFTPSSSSGSKVIAKDSTVLAQSAVGVVVAAAVVILSYFYEVRKRMK* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1587483 1594374 - Vvi3g152 Vvi3g152 783827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g152 289 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Vvi3g152 289 CDD ascorbate_peroxidase 4 246 - -
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Plant ascorbate peroxidase signature 220 244 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PANTHER L-ASCORBATE PEROXIDASE 4, PEROXISOMAL-RELATED 1 289 - -
Vvi3g152 289 Gene3D Peroxidase, domain 2 130 236 - -
Vvi3g152 289 Pfam Peroxidase 18 224 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 1 289 IPR044831 GO:0004601|GO:0034599
Vvi3g152 289 Gene3D - 17 243 - -
Vvi3g152 289 ProSiteProfiles Plant heme peroxidase family profile. 31 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601
Vvi3g152 289 SUPERFAMILY Heme-dependent peroxidases 9 248 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi3g152 289 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g152 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - vvi:100246866 561.992
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g152 Vvi18g248 ECH
Vvi3g152 Vvi4g1146 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g152 . . . . . . . . Cmo19g00742 . . . . . Sed05g2222 . Cpe15g00587 Bhi05g01726 Tan02g0695 Cmetu01g1029 . Hepe02g0430 . . . . . . . . . Cone12ag1229 Cone8ag1280 . . . Csa07g00093 . Cme01g01269 Blo04g00564 . . Bda14g00613 Bpe15g00817 . Bma03g00605 . . . . . . . Car19g00563 . . . . . . . . . . . . . . . . Lsi11g01196 . Chy01g00685 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63