Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g153 ATGGGATTCGTCAGTAGTATATTGGGACTTTTTGGGTTCGGAGTGGGGATTTCTATTGGGCTTTTGGTTGGGTATTTTTTCTTTATCTACTTCGAATCCAGCGATGTCAAGGACCCCGATATTCGCCCATTAGCCGAGCAGGACTCAGAAAGCTTGCAGCGGTTGCTTCCAGAGCTACCCCTTTGGGTGAAAAATCCCGATTTTGATCGTGTTGACTGGCTGAACAAGTTTATTGAATACATGTGGCCTTATCTGGATAAGGCAATTTGCAAGACTGTAAAAGATACCGCAGCACCGATCATTGCTGAGCAAATTCTAAAGTATAAGATCGATGCAGTCGAATTTAAAACACTTACATTAGGATCCCTACCACCAACTTTTCAAGGGATAAAAGTCTATTCTACTGATGAGAAGGAGTTGATCATGGAGCCATGCTTGAAATGGGCAGCAAATCCAAATGTGACTGTTGCTGTTAAAGCTTTTGGGTTGAAAGCAACTGCTCAGGTGGTGGATTTGCAAGTCTTTGCTCTACCACGTATTACCATGAAGCCGTTGGTTCCTAGTTTTCCCTGCTTTGCCAACATCTTCGTGTCTCTAATGGAGAAGCCTCATGTTGATTTTGGACTAAAGCTTCTAGGGGCTGATCTTATGTCAATCCCTGGGCTCTACCGGTTTGTTCAGGAGCTTATCAAGGAACAGGTTGCCAACATGTATCTCTGGCCAAGAACCCTTGACGTACAAATTTTAGACATAGCCAACGCAATGAAGAGGCCTGTAGGAATTCTCACTGTTAAGGTTCTGAGGGCGATGAAACTCAAAAAGAAAGATCTCTTGGGAGCATCAGACCCCTATGTAAAACTAAGACTTACTGAAGACAAGCTTCCATCGAAGAAGACTACTGTGAAGCACAAAAACTTGAATCCTGAATGGAATGAAGAGTTTAACTTAGTTGTCAGAGTTCCCGGGGTGCAAGCTTTAGAGCTTTGTGTTTATGACTGGGAGCAGGTTGGGAAACATGACAAGATGGGAATGAACGTCGTGCCTTTGAAAGAACTTCCTCCGGATGAGCCAAAGATGATGACTCTTGACCTCCTTAAGAGCCTGGATCCAAACGATTCTCAAAATGACAAAGGCCGTGGACAGCTTGAGGTGGAATTGACATACAAACCTTTCAAGGAGGAGGACATGGTGAAGGAGAGTGATGATTTAGGTACACTGGAGAAGGCTCCTGAAGGAACACCACCTGGTGGAGGTCTGCTTGTGGTCATAGTCCATGAAGCACAAGATTTGGAAGGAAAGCACCATACTAATCCACTTGTCCGGATTCTTTTCAGAGGGGAGGAGAGAAAAACTAAGCCAATAAAGAAGAGCAGAGATCCAAGATGGCAAGAGGAGTTCCAGTTTATGCTGGAGGAACCTCCCATTAACGATAAACTGCATGTGGAAGTCATCAGTACCTCCAAGAGGATCGGCCTGCTGCATCCTAAGGAATCTCTGGGGTACATAGTTGTCAATCTTGCTGATGTCGTGACCAACAAACGGATCAACGAGAAGTACCACCTGATAGACTCAAAGAATGGGCAGATTCAGATTGAGCTGCAGTGGAGAACTAGTTCCTGA 1620 44.69 MGFVSSILGLFGFGVGISIGLLVGYFFFIYFESSDVKDPDIRPLAEQDSESLQRLLPELPLWVKNPDFDRVDWLNKFIEYMWPYLDKAICKTVKDTAAPIIAEQILKYKIDAVEFKTLTLGSLPPTFQGIKVYSTDEKELIMEPCLKWAANPNVTVAVKAFGLKATAQVVDLQVFALPRITMKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADLMSIPGLYRFVQELIKEQVANMYLWPRTLDVQILDIANAMKRPVGILTVKVLRAMKLKKKDLLGASDPYVKLRLTEDKLPSKKTTVKHKNLNPEWNEEFNLVVRVPGVQALELCVYDWEQVGKHDKMGMNVVPLKELPPDEPKMMTLDLLKSLDPNDSQNDKGRGQLEVELTYKPFKEEDMVKESDDLGTLEKAPEGTPPGGGLLVVIVHEAQDLEGKHHTNPLVRILFRGEERKTKPIKKSRDPRWQEEFQFMLEEPPINDKLHVEVISTSKRIGLLHPKESLGYIVVNLADVVTNKRINEKYHLIDSKNGQIQIELQWRTSS* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1595360 1600111 - Vvi3g153 Vvi3g153 783828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g153 539 PRINTS C2 domain signature 277 289 IPR000008 -
Vvi3g153 539 PRINTS C2 domain signature 304 317 IPR000008 -
Vvi3g153 539 PRINTS C2 domain signature 326 334 IPR000008 -
Vvi3g153 539 Gene3D C2 domain 419 538 IPR035892 -
Vvi3g153 539 CDD C2 262 364 - -
Vvi3g153 539 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
Vvi3g153 539 Gene3D C2 domain 255 409 IPR035892 -
Vvi3g153 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 537 IPR045050 GO:0008289
Vvi3g153 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Vvi3g153 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Vvi3g153 539 SMART C2_3c 419 518 IPR000008 -
Vvi3g153 539 SMART C2_3c 261 361 IPR000008 -
Vvi3g153 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
Vvi3g153 539 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 537 - -
Vvi3g153 539 Pfam C2 domain 419 521 IPR000008 -
Vvi3g153 539 Pfam C2 domain 260 359 IPR000008 -
Vvi3g153 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 415 536 IPR035892 -
Vvi3g153 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g153 - - - vvi:100241744 1086.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g153 Vvi18g1140 ECH
Vvi3g153 Vvi18g1144 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g153 . . . . . . . . Cmo19g00743 . . Cma20g00755 . Car20g00656 Sed05g2221 . Cpe15g00588 Bhi05g01723 Tan02g0693 Cmetu01g1869 . Hepe02g0429 . . Cla02g00433 Cam02g0442 Cec02g0440 Cco02g0458 Clacu02g0443 Cmu02g0438 Cre02g0772 Cone12ag1230 Cone8ag1282 . . Lsi10g00492 Csa07g00094 Chy11g00259 Cme01g01268 Blo04g00565 . . Bda14g00614 Bpe15g00816 . Bma03g00606 . Sed01g0198 . Cmo20g00751 . Cma19g00735 . Car19g00564 Cpe16g00314 . Bhi10g01856 Tan05g1144 Cmetu11g0298 . Hepe08g0289 . . Cla02g01164 Cam02g1241 Cec02g1250 Cco02g1291 Clacu02g1223 Cmu02g1191 Cre02g1502 . Csa02g01388 . Cme11g00384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96